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pagnani
/
ArDCA.jl
Autoregressive networks for protein
MIT License
31
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8
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More versatile loglikelihood
#35
PierreBarrat
closed
6 months ago
0
How to download the aligned fasta files from Pfam database?
#34
psp3dcg
closed
6 months ago
3
What's the location of the trained model when generating a sample from given MSA
#33
psp3dcg
opened
6 months ago
5
add pseudocount 1/M/10 to p0 to avoid sequence with probability 0
#32
PierreBarrat
closed
7 months ago
2
Fixes #30 : allow version v1+ for NLopt
#31
PierreBarrat
closed
11 months ago
0
NLopt version restriction
#30
PierreBarrat
closed
11 months ago
1
Fix mindist
#29
pagnani
closed
1 year ago
0
ardca now copies input matrix; fixes #27
#28
PierreBarrat
closed
1 year ago
0
`ardca` silently modifies input matrix
#27
PierreBarrat
closed
1 year ago
1
How to get the correct idx for mutation inference
#26
AthenACHY
closed
6 months ago
3
Fixfunctor
#25
pagnani
closed
1 year ago
0
Precompile
#24
pagnani
closed
1 year ago
0
save ArNet to file
#23
PierreBarrat
closed
6 months ago
1
new function loglikelihood for arnet, arvar input
#22
pagnani
closed
1 year ago
0
added loglikelihood method
#21
pagnani
closed
2 years ago
1
Likelihood calculation
#20
MaksimovDenisMIPT
closed
2 years ago
2
Convert sampled sequences back to alignment file
#19
benjamin-lieser
closed
2 years ago
2
Missing permute in `(A::ArNet)(x::Matrix{T})`?
#18
christophfeinauer
closed
2 years ago
6
Smplr
#17
pagnani
closed
2 years ago
0
Maxgapfix
#16
pagnani
closed
2 years ago
0
TagBot trigger issue
#15
JuliaTagBot
closed
3 years ago
9
Fastdca
#14
pagnani
closed
3 years ago
1
fixed error in functor ArNet
#13
pagnani
closed
3 years ago
1
Noshared
#12
pagnani
closed
3 years ago
0
CompatHelper: bump compat for "Distributions" to "0.25"
#11
github-actions[bot]
closed
3 years ago
1
CompatHelper: add new compat entry for "DCAUtils" at version "1.0"
#10
github-actions[bot]
closed
3 years ago
1
changed to multithread infrastructure
#9
pagnani
closed
3 years ago
2
CompatHelper: bump compat for "LoopVectorization" to "0.12"
#8
github-actions[bot]
closed
3 years ago
1
Entropy
#7
pagnani
closed
3 years ago
0
CompatHelper: bump compat for "LoopVectorization" to "0.11"
#6
github-actions[bot]
closed
3 years ago
0
CompatHelper: add new compat entry for "ExtractMacro" at version "1.0"
#5
github-actions[bot]
closed
3 years ago
0
CompatHelper: add new compat entry for "NLopt" at version "0.6"
#4
github-actions[bot]
closed
3 years ago
0
CompatHelper: add new compat entry for "Distributions" at version "0.24"
#3
github-actions[bot]
closed
3 years ago
0
CompatHelper: add new compat entry for "CorrDCA" at version "0.1"
#2
github-actions[bot]
closed
2 years ago
0
CompatHelper: add new compat entry for "LoopVectorization" at version "0.9"
#1
github-actions[bot]
closed
3 years ago
0