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pallassgj / bpipe

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Composable Pipelines - Ability to Define Reusable Pipeline Segments #17

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
Currently you can add stages together, but it's not possible (or easy, anyway) 
to share segments of pipelines made up of common pieces.  For example, one 
should be able to define

{{{
  align = {
      exec "bwa ..."
  }

  dedupe = {
      exec "MarkDuplicates ..."
  }

  mapping = {  align + dedupe }

   Bpipe.run {
       mapping 
   }
}}}

Original issue reported on code.google.com by ssade...@gmail.com on 8 Mar 2012 at 11:20

GoogleCodeExporter commented 9 years ago

Original comment by ssade...@gmail.com on 9 Mar 2012 at 1:08

GoogleCodeExporter commented 9 years ago 
0.9.1

Original comment by ssade...@gmail.com on 10 Mar 2012 at 1:15