Heads-up: Releasing 0.13.1

ghost commented 10 years ago

We're due to release 0.13.1 in a few days (or as soon as we clear the queue), as a bugfix release stabilising 0.13.0, allowing us to start on the 3 month release cycle for 0.14.

Anything that isn't in 0.13.1 will have to wait until then to hit pypi.

Any objections, warnings or notes?

cc @jseabold , @yarikoptic, @juliantaylor, @takluyver

jreback commented 10 years ago

its py3.3 broken with 3.1 which is prob coming out soon; I guess I can just put up a warning in the docs/install. The only problem is that its going to become the default soon.I could doc it I guess.

@cgohlke can you incorporate that commit in the 3.3 build? (I believe this is ONLY a windows py3.3. issue w/ pytables 3.1)

yarikoptic commented 10 years ago

Hi guys, building 0.13.1 now and still getting the old

======================================================================
ERROR: test_select_with_many_inputs (pandas.io.tests.test_pytables.TestHDFStore)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/tmp/buildd/pandas-0.13.0+git464-g15a8ff7/debian/tmp/usr/lib/python2.7/dist-packages/pandas/io/tests/test_pytables.py", line 2999, in test_select_with_many_inputs
    result = store.select('df', [Term("ts>=Timestamp('2012-02-01')"),Term('users=selector')])
  File "/tmp/buildd/pandas-0.13.0+git464-g15a8ff7/debian/tmp/usr/lib/python2.7/dist-packages/pandas/io/pytables.py", line 643, in select
    raise KeyError('No object named %s in the file' % key)
KeyError: 'No object named df in the file'

that is on elderly ubuntu with

INSTALLED VERSIONS
------------------
commit: None
python: 2.7.3.final.0
python-bits: 64
OS: Linux
OS-release: 3.2.0-4-amd64
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: C
LANG: C

pandas: 0.13.0.dev
Cython: 0.15.1
numpy: 1.6.1
scipy: 0.9.0
statsmodels: 0.5.0
IPython: None
sphinx: 1.1.3
patsy: 0.2.1
scikits.timeseries: None
dateutil: 1.5
pytz: 2012c
bottleneck: None
tables: 2.3.1
numexpr: 1.4.2
matplotlib: 1.1.1rc
openpyxl: 1.7.0
xlrd: 0.6.1
xlwt: 0.7.2
xlsxwriter: None
sqlalchemy: None
lxml: None
bs4: 4.0.2
html5lib: 0.90
bq: None
apiclient: None

please advise

jreback commented 10 years ago

@yarikoptic numexpr is too old for pytables to deal; THEY don't even support < 2.0 I think.

will have to disable this for pytables stuff. Just skip it.

yarikoptic commented 10 years ago

btw -- fun part that on Debian wheezy it fails only for 64bit but not 32:

neurodebian@head2:~/deb/builds/pandas/0.13.1-1$ grep test_select_with_many_inputs pandas_0.13.1-1~nd70+1_*.build
pandas_0.13.1-1~nd70+1_amd64.build:test_select_with_many_inputs (pandas.io.tests.test_pytables.TestHDFStore) ... ERROR
pandas_0.13.1-1~nd70+1_amd64.build:ERROR: test_select_with_many_inputs (pandas.io.tests.test_pytables.TestHDFStore)
pandas_0.13.1-1~nd70+1_amd64.build:  File "/tmp/buildd/pandas-0.13.1/debian/tmp/usr/lib/python2.7/dist-packages/pandas/io/tests/test_pytables.py", line 3029, in test_select_with_many_inputs
pandas_0.13.1-1~nd70+1_i386.build:test_select_with_many_inputs (pandas.io.tests.test_pytables.TestHDFStore) ... ok

tables 2.3.1-3, numexpr 2.0.1-3

jreback commented 10 years ago

can u give me a login to that machine? the chroot u have me for sparc is only 64/bit right?

yarikoptic commented 10 years ago

yes -- this error happens on intels... unfortunately access to that particular machine would be problematic. But now (in the evening) I will try to follow my own http://neuro.debian.net/blog/2012/2012-04-14_ndtools.html within NeuroDebian VM to provide you with the ultimate 'replicate-yarikoptic' environment/instructions, ok?

yarikoptic commented 10 years ago

actually in that case it is just amd64 wheezy, so should appear in stock NeuroDebian wheezy VM... will test that first (running to pick up kids now)

jreback commented 10 years ago

I cannot repro this: numexpr 1.4.2 / 2.0.1, tables 2.3.1, numpy 1.6.1, cython 0.15.1

yarikoptic commented 10 years ago

Iirc Cython was 0.20 in my case... yet to get to the laptop

jreback notifications@github.com wrote:

I cannot repro this: numexpr 1.4.2 / 2.0.1, tables 2.3.1, numpy 1.6.1, cython 0.15.1

Reply to this email directly or view it on GitHub: https://github.com/pydata/pandas/issues/6103#issuecomment-34009306

Sent from a phone which beats iPhone.

yarikoptic commented 10 years ago

it might be more fun -- replicated while building package on NeuroDebian VM, but then it didn't fail when I just ran it with nosetests directly, so might be particularities of environment or smth like that -- will check and report back

ghost commented 10 years ago

@yarikoptic , can I get ssh access to the sparc box? just need to gather some system info.

yarikoptic commented 10 years ago

@y-p: sparc -- sure. send me your desired login name and public portion of ssh key with a passphrase ;-) this issue smells like a race condition somewhere. Seems to come up only when running full set of tests (nosetests -s -v pandas), and not 100% always, but never if I just run that test separately. I do not have enough brain bandwidth (nor clue where to dig) so I guess I will just catch exception at that point and skip if that particular one comes up

ghost commented 10 years ago

Will email you my ssh public key. My passphrase is "1-2-3-4", but don't tell anyone.

jreback commented 10 years ago

@cgohlke can you update the windows 3.3 build with the commit https://github.com/pydata/pandas/commit/9bc7bac27242a7192a1194a5eac943c821c0dd68

jreback commented 10 years ago

@cgohlke thanks....I meant could you actually update the build on your site? (just for 3.3, 64/32 bit)

http://www.lfd.uci.edu/~gohlke/pythonlibs/