if Project().trim:
raise NotImplementedError(('Trimming is not yet supported because '
'we need to keep track of the mapping from trimmed to '
' untrimmed states for joint clustering to be right'))
try:
ergodic_counts, mapping = MSMLib.ergodic_trim(raw_counts)
MSMLib.apply_mapping_to_assignments(assignments, mapping)
counts = ergodic_counts
except Exception as e:
logger.warning("MSMLib.ergodic_trim failed with message '{0}'".format(e))
in Builder.py