A sampled step index implementation of the PG-SGD algorithm - Githubissues

pangenome / odgi

Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

https://doi.org/10.1093/bioinformatics/btac308

MIT License

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A sampled step index implementation of the PG-SGD algorithm #454

Open subwaystation opened 2 years ago

subwaystation commented 2 years ago

[x] Clean existing functionality.
[x] Extensive refactoring.
[x] Skeleton.
[x] RISE.
[ ] Run along the path.
[ ] Fix ZIPF parts.
[ ] Functional odgi sort tests.
[ ] Performance tests. Compare with XP.
[ ] Functional odgi flip tests.
[ ] Functional odgi groom tests.
[ ] Functional odgi tips tests.
[ ] Functional odgi untangle tests.
[ ] ...