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pangenome / odgi

Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
https://doi.org/10.1093/bioinformatics/btac308
MIT License
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Progress in `odgi pav` #517

Closed AndreaGuarracino closed 1 year ago

AndreaGuarracino commented 1 year ago 
odgi pav -i input.og -b input.bed -P > pav.tsv
[odgi::pav] preparing the interval trees for querying target path ranges: 100.00% @ 2.00e+00 bp/s elapsed: 00:00:00:00 remain: 00:00:00:00
[odgi::pav] emitting PAV results: 100.00% @ 6.35e+01 bp/s elapsed: 00:00:00:34 remain: 00:00:00:00