order of species in odgi viz

pangenome / odgi

Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

https://doi.org/10.1093/bioinformatics/btac308

MIT License

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order of species in odgi viz #530

Closed isabelladistefano closed 3 weeks ago

isabelladistefano commented 1 year ago

Hi Andrea

I have my pangenome graph:

odgi viz -i allsixaccessions_chr8.fasta.gz.ceb3157.417fcdf.9fb5d42.smooth.final.og --colorbrewer-palette=[Set3:6] -o odgi_31_08_chr8_colortest30.png -x 2000

However I would like the order of the accessions to be changed. I am confused how to use -p, --paths-to-display option. This is also the same for the PAVs

Please advise me.

Best wishes,

Isabella

subwaystation commented 1 year ago

What is unclear about -p, --paths-to-display. Just write in each line of a file the path names in the order you desire.