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pangenome / pggb

the pangenome graph builder
https://doi.org/10.1038/s41592-024-02430-3
MIT License
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don't confuse vg with quotes #123

Closed ekg closed 3 years ago

ekg commented 3 years ago

Called in this context, they are included in the sample names, breaking VCF generation.

ekg commented 3 years ago

Fun trick: vg deconstruct defaults to calling each path as a haploid sample. With this merge, it's then possible to specify "no samples" and get this behavior with an awkward expression like -V chm13:/dev/null.