pggb graph comparison to genetic map

pangenome / pggb

the pangenome graph builder

https://doi.org/10.1038/s41592-024-02430-3

MIT License

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pggb graph comparison to genetic map #154

Open GSgen opened 2 years ago

GSgen commented 2 years ago

Hi,

I have made pggb graph using 10 assemblies. I have got a region with multiple breaks and I want to compare the graph with available genetic map to see if there are known introgressions in that region. Is there a way to compare pggb graph with genetic map?

Thank you!

AndreaGuarracino commented 1 year ago

Hi @GSgen, apologize for my dumbness, but would you please elaborate much more on what you have and would do?