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pangenome / pggb

the pangenome graph builder
https://doi.org/10.1038/s41592-024-02430-3
MIT License
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update smoothxg to perform the POA on unique sequences #280

Closed AndreaGuarracino closed 1 year ago

AndreaGuarracino commented 1 year ago

On average, this speeds up smoothxg by about 5X. In difficult cases, it goes much, much faster (see https://github.com/pangenome/smoothxg/pull/183).