Closed AndreaGuarracino closed 1 year ago
SPOA and abPOA introduce links not supported by any path, leading to graphs with uncovered edges (see https://github.com/pangenome/pggb/issues/299). This PR avoids that and should fix https://github.com/pangenome/pggb/issues/299. Moreover, it adds a tiny optimization in case there are no blocks to flip.
SPOA and abPOA introduce links not supported by any path, leading to graphs with uncovered edges (see https://github.com/pangenome/pggb/issues/299). This PR avoids that and should fix https://github.com/pangenome/pggb/issues/299. Moreover, it adds a tiny optimization in case there are no blocks to flip.