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pangenome / pggb

the pangenome graph builder
https://doi.org/10.1038/s41592-024-02430-3
MIT License
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Joining the Chromosome Alignments？ #307

Closed zskey-zn closed 1 year ago

zskey-zn commented 1 year ago

After running partition before pggb, get the Pan-genome map of each chromosome. How to merge the Pan-genome map of chromosomes?

likely cactus-graphmap-join in cactus ?

ekg commented 1 year ago

odgi squeeze

On Mon, Jun 19, 2023, 05:16 zskey-zn @.***> wrote:

After running partition before pggb, get the Pan-genome map of each chromosome. How to merge the Pan-genome map of chromosomes?

likely cactus-graphmap-join in cactus ?

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zskey-zn commented 1 year ago

thanks, I have solved this issue by odgi squeeze.