Open JoshuaDanielRubin opened 1 year ago
You can try reducing -s
, -l
, and -p
parameters in order to get more mappings that would keep everything in a single connected component. However, be aware that the alignment will become much slower, and also the next steps.
This also assumes that all input sequences can somehow! be aligned to each other in a way that they will form only one single connected component!
Hello,
I was wondering, is it possible to ensure that PGGB will produce a graph that has only a single connected component? Alternatively, which parameters can I pass to make it more likely that the resulting graph will have a single connected component?