Open clemgoub opened 10 months ago
Can you try again, but specifying a temporary folder where you are sure to have lots of space and that is a fast SSD? Usually, it is -D /scratch
on clusters
Dear @AndreaGuarracino, sorry I can only reply now. The server I'm currently using is a single node without a dedicated scratch disk. We have plenty of room for storage however on the disk I used for outputs. Would there still be some workaround/testing I could implement?
I am curious to know why it returns a signal 8 (floating point exception) if we have a disk issue? Would it be indicating that it is taking too long to write?
Thanks for you help!
Clém
Hello pggb team!
I've been able to run pggb successfuly on a couple of genomes (~150Mbp each, eukaryotes), and ramped up the analysis to 14 genomes. However, I encountered a new error (signal 8) after the pipeline produces the GFA:
I am using pggb from the main git branch, b2843d0fb7a12c0103427f30c55905ba0565ad41 I built a docker image from the Dockerfile, using the method to build locally.
Then:
The output folder shows:
Thanks for your help!
Clément