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pangenome / pggb

the pangenome graph builder
https://doi.org/10.1101/2023.04.05.535718
MIT License
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pggb: option requires an argument -- 'i' #379

Open RobStr12 opened 4 months ago

RobStr12 commented 4 months ago

Hi,

I'm trying to build a pangenome using pggb version 0.5.2. For this I use following command line:

pggb -i ./Spider_mite/data/Spider_mite.fa -o ./Spider_mite/output/pggb/ -n 2

However, each time I get the same error: pggb: option requires argument -- 'i'

But as you can see in the command, I've included the -i argument. Do you have an idea what could be the problem?

Extra info: I'm running the commands in a Rocky Linux 9.3 (Blue Onyx) environment

AndreaGuarracino commented 4 months ago

That's strange! How did you install PGGB?