search

pangenome / pggb

the pangenome graph builder
https://doi.org/10.1101/2023.04.05.535718
MIT License
346 stars 37 forks source link

For aligning chromosomes of different species over 100MYA or div is it better to use .masked files? #383

Open Isoris opened 4 months ago

Isoris commented 4 months ago

Hello,

I would like to know if using masked genomes is more efficient than non-masked genomes for all-vs-all cross species alignments?

Thank you in advance for your answer

Quentin