check installed tools and report issues

pangenome / pggb

the pangenome graph builder

https://doi.org/10.1038/s41592-024-02430-3

MIT License

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check installed tools and report issues #389

Closed AndreaGuarracino closed 6 months ago

AndreaGuarracino commented 6 months ago

./pggb -i LPA.fa.gz -V 'chm13' -o out
[pggb] ERROR: the following tools are not installed or not in the PATH:
- wfmash
- seqwish
- smoothxg
- odgi
- gfaffix
- vcfbub
- vcfwave
- MultiQC

to avoid issues like in #388