issues
search
pangenome
/
smoothxg
linearize and simplify variation graphs using blocked partial order alignment
Other
56
stars
6
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Performance when unchopping large graphs
#209
sivico26
opened
2 months ago
0
Compile SMOOTHXG for different SIMD architectures
#208
subwaystation
opened
4 months ago
0
fix odgi viz underflow
#207
AndreaGuarracino
closed
5 months ago
0
Fix path embedding
#206
AndreaGuarracino
closed
6 months ago
0
update odgi
#205
AndreaGuarracino
closed
7 months ago
0
How to understand the optimisation goals of smoothxg
#204
YX-Xiang
opened
8 months ago
1
update SPOA and abPOA
#203
AndreaGuarracino
closed
8 months ago
0
update odgi
#202
AndreaGuarracino
closed
9 months ago
0
update odgi
#201
AndreaGuarracino
closed
10 months ago
0
update odgi
#200
AndreaGuarracino
closed
11 months ago
0
[RELEASE] - Please make a new v0.7.1 release
#199
subwaystation
closed
1 year ago
1
Small optimization and static build with GNU Guix.
#198
pjotrp
closed
1 year ago
2
Avoid 2 graphs in memory, sample decompressed blocks, parallelize path embedding
#197
AndreaGuarracino
closed
1 year ago
3
a bit more logging and cleaning
#196
AndreaGuarracino
closed
1 year ago
0
Update `odgi` and a bit of cleaning
#195
AndreaGuarracino
closed
1 year ago
0
Fix uncovered edges
#194
AndreaGuarracino
closed
1 year ago
1
Update with a working `odgi`
#193
AndreaGuarracino
closed
1 year ago
0
make newer `gcc` happy
#192
AndreaGuarracino
closed
1 year ago
0
Less verbose logging
#191
AndreaGuarracino
closed
1 year ago
0
update odgi
#190
AndreaGuarracino
closed
1 year ago
0
Change on CLI on v0.7.0
#189
sivico26
closed
1 year ago
1
update odgi
#188
AndreaGuarracino
closed
1 year ago
0
update fixed `odgi paths`
#187
AndreaGuarracino
closed
1 year ago
0
Fix versioning
#186
AndreaGuarracino
closed
1 year ago
0
update odgi
#185
AndreaGuarracino
closed
1 year ago
0
"Error in cg_backtrack" strikes again
#184
sivico26
closed
1 year ago
4
Perform the POA on unique sequences + Emit POA blocks information in a table
#183
AndreaGuarracino
closed
1 year ago
5
"Assertion `idx <this->size()' failed" interpretation
#182
sivico26
closed
1 year ago
2
allow writing FASTAs of only hard blocks;
#181
AndreaGuarracino
closed
1 year ago
0
update `abpoa`
#180
AndreaGuarracino
closed
1 year ago
0
add workflow got catch cpu info
#179
subwaystation
closed
1 year ago
1
sync quantisation parameters
#178
subwaystation
closed
1 year ago
0
Generate consensus from smoothed graph
#177
BaxW
closed
1 year ago
1
fix wrong file path issue
#176
subwaystation
closed
1 year ago
0
always emit long version format
#175
AndreaGuarracino
closed
1 year ago
0
Execute the smoothing multiple times
#174
AndreaGuarracino
closed
1 year ago
1
update odgi
#173
AndreaGuarracino
closed
1 year ago
0
Simplify versioning
#172
AndreaGuarracino
closed
1 year ago
0
`-v/--version` should print to stdout instead of stderr
#171
subwaystation
closed
1 year ago
1
update odgi with faster sort and layout commands
#170
AndreaGuarracino
closed
2 years ago
0
Increase SPOA's portability (for Docker/Singularity)
#169
AndreaGuarracino
closed
2 years ago
0
Large fixed POA min overlap
#168
ekg
closed
2 years ago
0
zstdutil.hpp:14:10: fatal error: zstd.h: No such file or directory
#167
bredeson
closed
2 years ago
2
Update SPOA
#166
ekg
closed
2 years ago
0
Update abPOA
#165
ekg
closed
2 years ago
3
update abPOA (WIP: broken)
#164
ekg
closed
2 years ago
0
local alignment by default
#163
ekg
closed
2 years ago
0
update odgi
#162
subwaystation
closed
2 years ago
0
smoothxg crashes with signal 7
#161
cgroza
closed
1 year ago
8
Directory handling for temporary files
#160
AndreaGuarracino
closed
2 years ago
0
Next