Refine the load from snakemake to panoptes

panoptes-organization / snakemake

This is the development home of the workflow management system Snakemake. For general information, see

https://snakemake.readthedocs.io

MIT License

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Open agardelakos opened 5 years ago

agardelakos commented 5 years ago

In the current implementation, snakemake sends everything from its logs to panoptes. Identify panopte's needs and send only relevant info.

In current panoptes version, we only use log entries "job_info" and "progress"

agardelakos commented 5 years ago

The info we need is in these sections: "shellcmd", "job_info", "debug", "progress", "job_finished".