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pantherdb / features-bugs

Documentation, tracking new features and bugs for pantherdb.org
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Homolog search #12

Open mugitty opened 4 years ago

mugitty commented 4 years ago

searching for human protein id 'Q9UI25' returns unmapped id in homolog search API

{ "search": { "product": { "version": 15, "content": "PANTHERDB" }, "mapping": { "unmapped_ids": { "unmapped": { "organism": "Homo sapiens", "id": "Q9UI25" } } }, "search_type": "matching ortholog position info" } }

mugitty commented 4 years ago

@dustine32 , I checked the database. The gene in question is HUMAN|Gene=PRO0461|UniProtKB=Q9UI25

Note, this is a gene that does not hit any families

I am able to search by gene symbol.

select * from keyword_list_links_list_type_p1 where upper_keyword like 'PRO0461'; returns results in V15 test database.

However I am unable to search by protein id. select * from keyword_list_links_list_type_p1 where upper_keyword like 'Q9UI25'; does not return any results in V15 test database.