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pantherdb / fullgo_paint_update

Update of Panther and PAINT DBs with monthly GO release data
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These PAINT annotations are in amigo but not in PAINT GAFs #19

Closed dustine32 closed 6 years ago

dustine32 commented 6 years ago

From email with @pgaudet

Can you help me trace the source of these NOT anontations for PTHR13269

image

UniProtKB:E2R293 annotated to GO:0071790, specifically. The screenshot shows annotations from 2015 so need to find out where these are coming from. Checking the gene_association.paint_other.gaf submitted from PAINT on 8/2/18 for UniProtKB:E2R293 lines, I don't see this GO:0071790 annotation or the 2015 ones:

UniProtKB   E2R293  NDC1        GO:0070762  PMID:21873635   IBA PANTHER:PTN000327778|SGD:S000004493 C   Uncharacterized protein UniProtKB:E2R293|PTN001409632   protein taxon:9615  2017-02-28  GO_Central
UniProtKB   E2R293  NDC1        GO:0017056  PMID:21873635   IBA PANTHER:PTN000327778|UniProtKB:Q9BTX1|SGD:S000004493    F   Uncharacterized protein UniProtKB:E2R293|PTN001409632   protein taxon:9615  2017-02-28  GO_Central
UniProtKB   E2R293  NDC1        GO:0006999  PMID:21873635   IBA PANTHER:PTN000327778|SGD:S000004493 P   Uncharacterized protein UniProtKB:E2R293|PTN001409632   protein taxon:9615  2017-02-28  GO_Central

This issue may end up getting pushed up to amigo.

dustine32 commented 6 years ago

Page from above amigo screenshot: http://amigo.geneontology.org/amigo/gene_product/UniProtKB:E2R293

dustine32 commented 6 years ago

Amigo load details link: http://amigo.geneontology.org/amigo/load_details

dustine32 commented 6 years ago

With the latest load to amigo, these NOT annotations are finally gone: image

@pgaudet Looks like this is resolved?

pgaudet commented 6 years ago

Hurray !!!! Thank you !!