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pantherdb / pango

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Collapse multiple qualifiers for same annotation #36

Open dustine32 opened 1 year ago

dustine32 commented 1 year ago

From a bug spotted by @huaiyumi:

There are three genes that have duplicated annotations because the original annotation data have different qualifiers. Here are those three genes: P50135      is_active_in      GO:0005829 P50135      located_in  GO:0005829 P62945      part_of     GO:0022625 P62945      located_in  GO:0022625 Q6PCB0      part_of     GO:0062023 Q6PCB0      located_in  GO:0062023 Please make them unique in the PanGO data.

We currently do not output any of the standard qualifiers used in the above examples. The only qualifiers we've been outputting from the data_conversion code are the PAINT qualifiers contributes_to and colocalizes_with, even though we are probably not displaying qualifiers at all on the PanGO site.