Open tmushayahama opened 4 months ago
URL: https://pantree-dev.usc.edu/webservices/go/overrep.jsp
The ontology parameter accepts one of the following options, identified by their id:
{ "label": "biological process PAN-GO", "id": "biological_process_IBA" }, { "label": "molecular function PAN-GO", "id": "molecular_function_IBA" }, { "label": "cellular component PAN-GO", "id": "cellular_component_IBA" }
{ "species": "HUMAN", "test_type": "FISHER", "ontology": "biological_process_IBA", "input": [ "AKT1", "BDNF", "CCKAR", "CHI3L1", "CHRNA7", "CLDN5", "CNR1", "COMT", "DPYSL2", "DTNBP1", "EGF", "GABRA1", "GABRB2", "GAD1", "GRIK3", "GRM3", "IL10", "MCHR1", "MLC1", "NEUROG1", "NOS1", "NOS1AP", "NOTCH4", "NPY", "NRG1", "OLIG2", "PDE4B", "PLA2G4A", "PLXNA2", "PPP3CC", "PRODH", "RELN", "RGS4", "RTN4", "SNAP25", "SRR", "SYN2", "TNF", "TP53", "UFD1L", "XBP1", "YWHAE" ] }
@mugitty @dustine32 @thomaspd This is the abstraction I was looking for, so we can change this issue if you ave different Ontology Options
Update endpoint for over-representation test form on landing page to to https://enrichment.functionome.org/webservices/go/overrep.jsp?
Endpoint
URL: https://pantree-dev.usc.edu/webservices/go/overrep.jsp
Required Parameters
Ontology Options
The ontology parameter accepts one of the following options, identified by their id:
Example Request
@mugitty @dustine32 @thomaspd This is the abstraction I was looking for, so we can change this issue if you ave different Ontology Options