issues
search
paoloshasta
/
shasta
De novo assembly from Oxford Nanopore reads.
https://paoloshasta.github.io/shasta/
Other
74
stars
11
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Phased haplotypes
#40
jiadong324
opened
4 weeks ago
9
filesystem error: cannot create directory: Permission denied [ShastaRun]
#39
handesome
closed
1 month ago
3
Caution about herro/dorado correct tossing out repetitive reads prio to Shasta assembly
#38
jelber2
closed
1 month ago
4
Introduce AssemblerReadGraph4
#37
kokyriakidis
closed
1 month ago
0
No alignment
#36
portbo
closed
2 months ago
10
Add Shasta-0.13.0 release companion notes
#35
kokyriakidis
closed
2 months ago
0
Fix bug in experimental cleanup code
#34
kokyriakidis
closed
2 months ago
0
Add experimental assembly cleanup functionality
#33
kokyriakidis
closed
2 months ago
0
assembly mode2 with "corrected" reads instead of assembly mode 3?
#32
jelber2
closed
1 month ago
4
hugepages permission denied on x1.32xlarge
#31
qqwang-berkeley
closed
4 months ago
5
usage: hybrid mode
#30
LGG02
closed
1 month ago
1
A genome with extremely rich simple repeats
#29
YouxinZhao
closed
1 month ago
10
small N50 of assembly
#28
csuzhang
closed
1 month ago
3
Memory allocation failure during mremap call for MemoryMapped::Vector.
#27
c2997108
closed
5 months ago
10
Total non-trivial bubble chain length for this component 0, N50 0
#26
jelber2
closed
3 months ago
14
Assertion failed LowHash0::adjustMinMaxBucketSizes
#25
asylvz
closed
6 months ago
2
Unusual performance on R10.4 Dorado data
#24
Mon3trK
closed
6 months ago
9
the difference of segments and path
#23
Jerry-is-a-mouse
closed
6 months ago
5
QuickStart still refers to CZI site and old release
#22
diekhans
closed
8 months ago
1
A little confusing naming
#21
JMencius
closed
9 months ago
2
Fix new missing headers with newer gcc 13.2.0.
#20
emollier
closed
11 months ago
1
Shasta with gzipped input FASTQ
#19
Adoni5
closed
11 months ago
4
Assembly of complex plant regions
#18
jav6745
closed
8 months ago
2
Obtaining second haploid assembly from assembly mode 2
#17
tododge
closed
6 months ago
24
Haplotype partitioning using phased SNPs
#16
ekg
closed
8 months ago
6
src/*.hpp: fix build failures with gcc 13
#15
emollier
closed
1 year ago
3
Program shasta breakpoint reruns
#14
Ban2dao
closed
11 months ago
9
feature request - norm or best parameter ranges in stdout.log
#13
colindaven
closed
1 year ago
5
Why a worse assembly is obtained when more read files are assembled?
#12
ElviraTo
closed
1 year ago
6
Assembling large plant genome with R10 reads
#11
sivico26
closed
1 year ago
12
advice on using suboptimal memory settings
#10
RvV1979
closed
1 year ago
4
Memory for Wheat Assembly
#9
anandravi95
closed
1 year ago
15
Telomere assembly
#8
paoloshasta
closed
1 year ago
20
Mixed R9/R10 assemblies
#7
paoloshasta
closed
1 year ago
2
rebasecalling highly effective
#6
colindaven
closed
11 months ago
10
Illegal instruction error
#5
WenyuLiang
closed
2 years ago
11
--Reads.desiredCoverage does to work when RLE is turned off
#4
paoloshasta
closed
2 years ago
4
Feature request: support for multiple reads types, e.g. duplex Q30 reads
#3
osilander
closed
2 years ago
4
./shasta-Linux-0.10.0: line 1: Not: command not found
#2
osilander
closed
2 years ago
5
Assembly configurations for ONT R10 reads
#1
paoloshasta
closed
1 year ago
20