DPpackage seems to be missing from the docker container. - Githubissues

papaemmelab / toil_cnacs

toil wrapper for CNACS

MIT License

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DPpackage seems to be missing from the docker container. #6

Open Balthasar-eu opened 2 years ago

Balthasar-eu commented 2 years ago

Python version: 2.7
Operating System: Linux (CentOS)

Description

DPpackage seems to be missing from the docker image.

WARNING:toil.leader:s/1/jobNaR6YN Error in library(DPpackage) : there is no package called ‘DPpackage’

What I Did

toil_cnacs run \
    $outdir/jobstore \
    --stats \
    --db_dir $cnacs_db \
    --outdir $outdir/outdir \
    --pool_dir $cnacs_pon \
    --fasta $genome \
    --singularity docker://papaemmelab/docker-cnacs \
    --volumes "/home/projects/$projectdir" "/home/projects/$projectdir" \
    --samp ${indir}/${sample}.bam