papaemmelab / toil_container

:whale: Toil + Docker and Singularity.
MIT License
9 stars 6 forks source link

πŸš€ use isolated tmp (resolves #15) #16

Closed jsmedmar closed 6 years ago

jsmedmar commented 6 years ago

Make sure that tmp dirs are removed, that singularity doesn't overwrite $HOME and that tmp dirs are unique.

codecov[bot] commented 6 years ago

Codecov Report

Merging #16 into master will decrease coverage by 0.82%. The diff coverage is 92.85%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #16      +/-   ##
==========================================
- Coverage     100%   99.17%   -0.83%     
==========================================
  Files           5        5              
  Lines         219      243      +24     
==========================================
+ Hits          219      241      +22     
- Misses          0        2       +2
Impacted Files Coverage Ξ”
toil_container/jobs.py 100% <100%> (ΓΈ) :arrow_up:
toil_container/containers.py 98.05% <92.59%> (-1.95%) :arrow_down:

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