issues
search
parashardhapola
/
scarf
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
http://scarf.readthedocs.io
BSD 3-Clause "New" or "Revised" License
96
stars
12
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Updated consume() in CrDirReader [Polars -> Pandas]
#134
Gautam8387
opened
2 days ago
0
Update Mark HVGS
#133
Gautam8387
opened
3 days ago
0
ZarrMerge writer import for backwards compatibility.
#132
Gautam8387
opened
1 week ago
0
Addition of Metric Calculation Methods
#131
Gautam8387
opened
1 week ago
0
CrDirReader Update [Polars -> Pandas]
#130
Gautam8387
closed
2 weeks ago
0
Fix mapping key
#129
oskbor
closed
2 weeks ago
0
Fall back to using feature names when mapping
#128
oskbor
opened
2 weeks ago
0
Support for BD formatted mtx files
#126
oskbor
opened
1 month ago
0
Added Support For Merging Multiple DataStore and Handling Different Assay Types
#125
Gautam8387
closed
2 weeks ago
2
Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows
#124
dependabot[bot]
opened
2 months ago
0
Added Support for Reading Unfiltered Cell Ranger Feature Barcode Matrices (MEX Format)
#123
Gautam8387
closed
1 month ago
0
Use target cell_key when mapping
#122
oskbor
closed
1 month ago
0
Support raw (unfiltered) matrices in CrDirReader
#121
oskbor
closed
1 month ago
1
Scarf core package
#120
oskbor
opened
2 months ago
0
Merging datasets with different amount of features. Is it possible?
#119
olferievm
closed
4 months ago
1
pip install scarf issue
#118
olferievm
closed
4 months ago
0
error at step: ds.plot_marker_heatmap
#117
JelenaKrneta
opened
4 months ago
0
Categorical keys are not imported when converting from H5ad to Zarr
#116
rpadmanabhan
opened
4 months ago
1
Fixes for parallell runs
#115
oskbor
closed
5 months ago
1
Conversion from anndata to zarr and umap visualization
#114
ajulienla
closed
9 months ago
1
Doublet detection
#113
hi-ilkin
closed
3 months ago
0
Error in conversion from AnnData to Zarr
#112
stefraptis
opened
11 months ago
0
Production release with a version bump
#110
parashardhapola
closed
1 year ago
0
Production release
#109
parashardhapola
closed
1 year ago
0
Allow mapping using gene names
#107
Sagva
opened
1 year ago
0
Interoperability documentation - Scanpy
#106
rhodesch
closed
1 year ago
1
Use thread pool executor
#105
hi-ilkin
closed
1 year ago
1
using ThreadPoolExecutor instead of ThreadPool to avoid semlock
#104
hi-ilkin
closed
1 year ago
1
Typos and small documentation improvements
#103
hi-ilkin
opened
1 year ago
0
ZarrMerge behaves weirdly
#102
hi-ilkin
opened
1 year ago
0
Production release
#101
parashardhapola
closed
1 year ago
0
Production release
#100
parashardhapola
closed
1 year ago
0
Production release
#99
parashardhapola
closed
1 year ago
0
Production release
#98
parashardhapola
closed
1 year ago
0
Fixes/pseudotime
#97
parashardhapola
closed
1 year ago
0
bug, typing and docstring fixes
#96
parashardhapola
closed
1 year ago
0
Production release
#95
parashardhapola
closed
1 year ago
0
Improvements in make_bulk
#94
parashardhapola
closed
1 year ago
0
added support for reading unfiltered cellranger h5 files
#93
parashardhapola
closed
1 year ago
0
Added HTO demultiplexing feature
#92
parashardhapola
closed
1 year ago
0
Feature/harmony
#91
parashardhapola
closed
1 year ago
0
pip installation fails with this ERROR: Could not install packages due to an OSError: [Errno 30] Read-only file system: '/opt/python/3.9.14/lib/python3.9/site-packages/texttable.py'
#90
bioarpit1
opened
1 year ago
0
Unsure what this error message is trying to tell me
#89
aichander
opened
1 year ago
0
version bump
#88
parashardhapola
closed
1 year ago
0
bug fix in SubsetZarr when using workspace
#87
parashardhapola
closed
1 year ago
0
Exposed ann_index helpers in run_mapping
#86
parashardhapola
closed
1 year ago
0
fixed workspace related bug in mapping_utils
#85
parashardhapola
closed
1 year ago
0
Update README.rst
#83
parashardhapola
closed
1 year ago
0
How to add feature name changed by gene name?
#82
melancholy12
closed
1 year ago
2
cannot make UMAP
#81
melancholy12
closed
1 year ago
4
Next