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parashardhapola / scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
http://scarf.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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Additonal feature request to ds.plot_layout() #57

Open rwarfvinge opened 3 years ago

rwarfvinge commented 3 years ago

I am missing the following features in the ds.plot_layout, If you could add any of them it would be much appreciated:

1) An option to give new axis label So I can hide labels given at : ds.make_graph(label = "a")) and keep RNA_UMAP1/RNA_UMAP2

2) The option to put your on title ontop of the umap. So you for ex. can put in you sample name. Currently it is automatically states the selected parameter for color_by in ds.plot_layout()

2) After projections onto another a data set, to be able to sort cells displayed in the umap based on projections values. So the smaller dots ends up in the bottom layer of the umap.

Thanks!

parashardhapola commented 3 years ago

Hi,

For point 2: Version 0.19.1 is out now. This version contains the parameter title in the plot_layout function. This will allow you to set cutom titles for your plots.

The solutions for point 1 and 3 will appear in the next version that we are planning to release next week.

rwarfvinge commented 3 years ago

Fantastic, thanks for the help!

parashardhapola commented 3 years ago

I'll keep this issue open until we have fixed the rest of the issues.