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parklab / HiNT

HiC for copy Number variation and Translocation detection
MIT License
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background matrix #18

Open distilledchild opened 3 years ago

distilledchild commented 3 years ago

I am curious that I can get background matrix for the reference, mRatNor1, https://vgp.github.io/genomeark/Rattus_norvegicus/

Can I make background matrix myself?

XiaoTaoWang commented 2 years ago

Hi, this is Xiaotao, we recently developed a new method called EagleC (https://github.com/XiaoTaoWang/EagleC) for detecting SVs from 3C-based data. EagleC does not need a background matrix for SV detection and support any genome in theory. Take a look and hope it is useful in your project!

distilledchild commented 2 years ago

@XiaoTaoWang Thank you for the tool, and I will try that one! Thank you.