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parklab / HiNT

HiC for copy Number variation and Translocation detection
MIT License
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Always report ERROR: path to the matrixfile is not valid. #20

Open wzhang42 opened 3 years ago

wzhang42 commented 3 years ago

Hi, Dear HiNT developer, Thanks for developing this HiNT. I have successfully installed HiNT. I am using hint tl. But it always return ERROR: path to the matrixfile is not valid. I am very sure that the full file path for matrixfile(.hic) /home/XX/testData/test.hic is there. Could you tell me the path is absolute path or relative path? Could you give me a real example how to use this commandline, how to configure the file path? I tried absolute path and relative path, but it always return ERROR: path to the matrixfile is not valid. Thank you in advance! My command line is as the following hint tl -m /home/WZ/testData/test.hic -f juicer --refdir /home/WZ/HiNT_Reference/hg19 --backdir /home/WZ/HiNT_Background/hg19 -g hg19 -n test -c 0.05 --ppath /home/WZ/pairix -p 8 -o test

PPWEST522 commented 2 years ago

Hi,@wzhang42

I found the same issue with you. Have you already solved it? Hope you can help me! THANKS!

PENG PU

wzhang42 commented 2 years ago

@PPWEST522 , No, no one help me. Already give up.

SplitInf commented 1 year ago

Hi it should be absolute path. Make sure you have permission to read the files. If you are using docker make sure you have set your bind mounts properly so the files can be accessed.