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parklab
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MuSiCal
A comprehensive toolkit for mutational signature analysis
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"maximum number of iterations reached" in de novo signatures extraction
#83
Spirit-booze
opened
3 weeks ago
1
Matching and Referring - Signature Assignment
#82
shengxindaniu
opened
1 month ago
0
MuSiCal looses signatures when refitting against reduced set of signatures
#81
quail768
opened
1 month ago
0
TypeError: _nnls.nnls() missing required argument 'n' (pos 3)
#80
andreyurch
opened
2 months ago
0
Run MuSical refitting step sing customized set of signatures
#79
itigupta2429
closed
2 months ago
1
[catalog] Updates on the COSMIC signatures - ValueError
#78
jinhys
closed
3 months ago
3
Add Pearson Correlation to Model
#77
JuseTiZ
closed
3 months ago
1
Cohort Stratification Error
#76
jfajn
closed
6 months ago
2
Add example scripts for preprocessing
#75
Hu-JIN
closed
7 months ago
0
De novo signature discovery - very slow
#74
maia-munteanu
closed
8 months ago
2
Refitting example
#73
mandronescu
closed
8 months ago
5
Fix an issue where data files are not installed
#72
Hu-JIN
closed
9 months ago
0
Cannot load catalogs
#71
dspagnolo09
closed
9 months ago
2
Update README.md
#70
Hu-JIN
closed
9 months ago
0
Update MuSiCal logo
#69
Hu-JIN
closed
9 months ago
0
Update preprocessing.py to change a default value
#68
Hu-JIN
closed
11 months ago
0
Rstudio Version request
#67
Glies2
closed
6 months ago
1
Turned tabs into spaces
#66
BeGeiger
closed
1 year ago
0
Fixed indentation
#65
BeGeiger
closed
1 year ago
0
Bug fixes remove_samples_based_on_gini
#64
BeGeiger
closed
1 year ago
0
Bug fix; Missing connected signatures
#63
BeGeiger
closed
1 year ago
0
Small bug in remove_samples_based_on_gini?
#62
ampregnall
closed
1 year ago
2
Challenges with Model Validation
#61
laurelhiatt
closed
2 years ago
9
ModuleNotFoundError: No module named 'musical.denovo'
#60
JoseFrancoAlvarez
closed
2 years ago
1
Bug fix related to input of DenovoSig
#59
Hu-JIN
closed
2 years ago
0
Update setup.py
#58
Hu-JIN
closed
2 years ago
0
Update setup.py
#57
Hu-JIN
closed
2 years ago
0
Dev
#56
Hu-JIN
closed
2 years ago
0
Dev
#55
Hu-JIN
closed
2 years ago
0
Remove obsolete codes
#54
Hu-JIN
closed
2 years ago
0
Dev
#53
Hu-JIN
closed
2 years ago
0
Dev
#52
Hu-JIN
closed
2 years ago
0
Update example_validation_internal.ipynb
#51
Hu-JIN
closed
2 years ago
0
Dev
#50
Hu-JIN
closed
2 years ago
0
Dev
#49
Hu-JIN
closed
2 years ago
0
Dev
#48
Hu-JIN
closed
2 years ago
0
Dev
#47
Hu-JIN
closed
2 years ago
0
Clean up obsolete codes, add examples, and update readme.
#46
Hu-JIN
closed
2 years ago
0
fix init for cleaned up files
#45
dgulhan-bio
closed
2 years ago
0
Catalog handling, validation, cleaning
#44
dgulhan-bio
closed
2 years ago
0
Dev
#43
Hu-JIN
closed
2 years ago
0
Major improvements
#42
Hu-JIN
closed
3 years ago
0
Relatively stable version of MuSiCal
#41
Hu-JIN
closed
3 years ago
0
Improve matching and refitting for samples with large errors
#40
Hu-JIN
closed
2 years ago
0
Update the default of load_catalog()
#39
Hu-JIN
closed
2 years ago
0
Improve the structure of DenovoSig
#38
Hu-JIN
closed
2 years ago
0
Improve fcluster or cut_tree in hierarchical clustering
#37
Hu-JIN
closed
2 years ago
0
Update mannwhitneyu such that it does not throw an error when the two arrays are identical and contains a single value
#36
Hu-JIN
closed
2 years ago
0
Output of beta_divergence when beta = 1 can be negative sometimes
#35
Hu-JIN
closed
2 years ago
0
Add a comment on n_replicates
#34
Hu-JIN
closed
2 years ago
0
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