BenoitFiset
commented
3 years ago This file was done with UCSC LiftOver.... there are 147 deletions..... do these affect the outcome of NGSCheckMate ?
The reason: Deleted in new:= Sequence intersects no chains
Deleted in new
chr19 54965859 54965860 rs3813148 G A
Deleted in new
chr11 124096246 124096247 rs2466613 G A
Deleted in new
chr7 100371473 100371474 rs78193191 G A
Deleted in new
chr8 2054170 2054171 rs3817705 C T
Deleted in new
chr19 8808941 8808942 rs2340550 T C
Deleted in new
chr19 55143490 55143491 rs1061681 G T
Deleted in new
chr7 130418688 130418689 rs111400400 T C
Deleted in new
chr22 24325094 24325095 rs140195 G A
Deleted in new
chr19 8808899 8808900 rs10410943 T C
Deleted in new
chr19 55143451 55143452 rs1061680 T C
Deleted in new
chr8 2048830 2048831 rs968381 A G
Deleted in new
chr8 143746049 143746050 rs2976399 G A
Deleted in new
chr19 54744360 54744361 rs2361801 C G
Deleted in new
chr17 35696803 35696804 rs58654829 C T
Deleted in new
chr9 136268083 136268084 rs3124747 A G
Deleted in new
chr14 22102373 22102374 rs12894405 A G
Deleted in new
chr14 22102611 22102612 rs10138704 A G
Deleted in new
chr14 22102591 22102592 rs10138694 A G
Deleted in new
chr19 54746050 54746051 rs620207 T G
Deleted in new
chr9 43849816 43849817 rs4063192 A G
Deleted in new
chr10 47087500 47087501 rs3824733 C T
Deleted in new
chr7 130418743 130418744 rs111731678 A C
Deleted in new
chr1 13037822 13037823 rs202065754 A G
Deleted in new
chr9 43861080 43861081 rs62536501 T G
Deleted in new
chr19 54745506 54745507 rs61734496 A G
Deleted in new
chr19 54746080 54746081 rs28445220 A G
Deleted in new
chr19 54745507 54745508 rs61734497 C T
Deleted in new
chr19 54745977 54745978 rs1052964 A G
Deleted in new
chr5 140563573 140563574 rs2697534 A G
Deleted in new
chr19 54745549 54745550 rs71257443 C A
Deleted in new
chr19 54745988 54745989 rs1052963 C G
Deleted in new
chr9 136268037 136268038 rs3124748 C T
Deleted in new
chr22 22868492 22868493 rs361666 C A
Deleted in new
chr22 22869547 22869548 rs362011 A G
Deleted in new
chr7 100550872 100550873 rs74836112 A C
Deleted in new
chr22 22868496 22868497 rs361762 C G
Deleted in new
chr1 13036246 13036247 rs201369259 T A
Deleted in new
chr1 13329149 13329150 rs202211137 T C
Deleted in new
chr1 13036329 13036330 rs200053605 G A
Deleted in new
chr22 22868772 22868773 rs361737 C T
Deleted in new
chr22 22869544 22869545 rs361580 A C
Deleted in new
chr1 144854536 144854537 rs3851872 A G
Deleted in new
chr7 100550654 100550655 rs377581018 C A
Deleted in new
chr22 22868775 22868776 rs362173 C T
Deleted in new
chr9 43816734 43816735 rs200986004 A C
Deleted in new
chr7 100550696 100550697 rs77302959 C T
Deleted in new
chr5 140563762 140563763 rs17844658 C A
Deleted in new
chr7 100550703 100550704 rs141925032 C A
Deleted in new
chr1 148591269 148591270 rs372610539 A G
Deleted in new
chr22 22869217 22869218 rs362132 A G
Deleted in new
chr19 42265888 42265889 rs11548735 G T
Deleted in new
chr22 22869537 22869538 rs361611 T C
Deleted in new
chr1 144854527 144854528 rs78461771 T C
Deleted in new
chr9 43849811 43849812 rs71243870 T G
Deleted in new
chr1 144615236 144615237 rs77154268 T G
Deleted in new
chr7 100550810 100550811 rs371970072 A C
Deleted in new
chr1 13645775 13645776 rs370751361 C T
Deleted in new
chr1 148756498 148756499 rs201435207 A G
Deleted in new
chr7 100550807 100550808 rs368043565 C A
Deleted in new
chr7 100607870 100607871 rs6960868 C T
Deleted in new
chr7 100550849 100550850 rs62483691 C G
Deleted in new
chr15 20741728 20741729 rs201329257 A G
Deleted in new
chr22 22869208 22869209 rs362124 G C
Deleted in new
chr7 100550684 100550685 rs142726350 A G
Deleted in new
chr7 100550672 100550673 rs73398722 A C
Deleted in new
chr7 100550753 100550754 rs374669929 C T
Deleted in new
chr1 144615101 144615102 rs201543878 A G
Deleted in new
chr7 100550708 100550709 rs375505095 A C
Deleted in new
chr19 40392346 40392347 rs139175656 G C
Deleted in new
chr7 100550705 100550706 rs79971461 A T
Deleted in new
chr1 144615103 144615104 rs199745076 T C
Deleted in new
chr7 100550723 100550724 rs73398725 A C
Deleted in new
chr7 100550743 100550744 rs76608602 A C
Deleted in new
chr19 54744365 54744366 rs1052984 C T
Deleted in new
chr7 100550744 100550745 rs74474011 T C
Deleted in new
chr7 100612944 100612945 rs76619309 C T
Deleted in new
chr7 100550657 100550658 rs370556537 A C
Deleted in new
chr7 100550693 100550694 rs73398723 T C
Deleted in new
chr7 100608822 100608823 rs35790618 G T
Deleted in new
chr7 100550756 100550757 rs113011992 C A
Deleted in new
chr1 12980121 12980122 rs148616830 G C
Deleted in new
chr7 100610068 100610069 rs10258821 A T
Deleted in new
chr7 100608883 100608884 rs73163797 G A
Deleted in new
chr7 100550868 100550869 rs62483692 A C
Deleted in new
chr7 100550767 100550768 rs374457792 - A
Deleted in new
chr7 100607850 100607851 rs6960854 C G
Deleted in new
chr1 143743962 143743963 rs374331358 T G
Deleted in new
chr19 54744357 54744358 rs1052992 T G
Deleted in new
chr7 100550799 100550800 rs28420633 G A
Deleted in new
chr7 100550786 100550787 rs28530520 G A
Deleted in new
chr7 75052078 75052079 rs236664 A T
Deleted in new
chr1 12980126 12980127 rs142075338 C T
Deleted in new
chr7 100608825 100608826 rs73163794 C G
Deleted in new
chr1 143744159 143744160 rs61823125 G A
Deleted in new
chr7 100612951 100612952 rs79881008 G A
Deleted in new
chr1 144619400 144619401 rs61676308 A G
Deleted in new
chr7 100550721 100550722 rs75292014 A G
Deleted in new
chr17 34587731 34587732 rs201964785 G C
Deleted in new
chr7 100550759 100550760 rs150620929 A C
Deleted in new
chr7 100608369 100608370 rs73714276 A C
Deleted in new
chr7 100608777 100608778 rs73163792 T C
Deleted in new
chr9 43133275 43133276 rs200706370 C T
Deleted in new
chr7 100608778 100608779 rs73163793 C T
Deleted in new
chr7 100550734 100550735 rs371272715 C T
Deleted in new
chr7 72738762 72738763 rs6980124 T C
Deleted in new
chr7 72738761 72738762 rs6980258 G A
Deleted in new
chr7 100608867 100608868 rs67377634 A G
Deleted in new
chr7 100550837 100550838 rs372391962 G A
Deleted in new
chr21 46011750 46011751 rs233305 G A
Deleted in new
chr1 148741708 148741709 rs200067528 T C
Deleted in new
chr7 100612968 100612969 rs73168328 A G
Deleted in new
chr10 47762141 47762142 rs2801067 T C
Deleted in new
chr7 100550725 100550726 rs367788571 T C
Deleted in new
chr7 100550754 100550755 rs28606475 A C
Deleted in new
chr7 100550836 100550837 rs78118592 C T
Deleted in new
chr1 148004643 148004644 rs199511253 T C
Deleted in new
chr7 100550785 100550786 rs79714278 T C
Deleted in new
chr21 46011744 46011745 rs233304 G A
Deleted in new
chr7 100550776 100550777 rs28617762 T C
Deleted in new
chr7 100550815 100550816 rs62483690 G A
Deleted in new
chr1 144598640 144598641 rs1698687 C T
Deleted in new
chr7 100550695 100550696 rs371207007 C G
Deleted in new
chr7 100612960 100612961 rs78487486 G C
Deleted in new
chr7 100550798 100550799 rs28705341 C T
Deleted in new
chr1 148004648 148004649 rs74731244 G C
Deleted in new
chr7 100550861 100550862 rs369808949 A C
Deleted in new
chr7 100550850 100550851 rs113108647 G A
Deleted in new
chr7 100550858 100550859 rs376696009 C A
Deleted in new
chr1 149576744 149576745 rs370400069 G A
Deleted in new
chr7 100550813 100550814 rs375674599 C T
Deleted in new
chr7 100550814 100550815 rs369769353 A G
Deleted in new
chr7 100550864 100550865 rs373357206 C T
Deleted in new
chr1 148579624 148579625 rs201422830 T C
Deleted in new
chr1 144598658 144598659 rs139801602 C T
Deleted in new
chr1 144617231 144617232 rs374488746 C G
Deleted in new
chr7 100550827 100550828 rs77595320 A C
Deleted in new
chr19 54745992 54745993 rs11673178 G A
Deleted in new
chr7 100550697 100550698 rs201598393 G A
Deleted in new
chr1 143744155 143744156 rs376311436 A G
Deleted in new
chr7 100550667 100550668 rs374277691 C G
Deleted in new
chr1 143744167 143744168 rs368458221 T G
Deleted in new
chr19 40408127 40408128 rs4803310 G A
Deleted in new
chr1 144619398 144619399 rs4067645 G A
Deleted in new
chr7 100550840 100550841 rs200242471 C A
Deleted in new
chr7 100550790 100550791 rs80228227 A G
Deleted in new
chr7 100550825 100550826 rs78072446 C G
Deleted in new
chr7 100550835 100550836 rs76594565 T G
Thanks,
B.
Thank you! We will check the file briefly and merge.