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parklab / NGSCheckMate

Software program for checking sample matching for NGS data
MIT License
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BAM data and FASTQ data were inconsistent #42

Open lqsae opened 2 years ago

lqsae commented 2 years ago

Hi, RNAseq and WES data of the sample were measured. I was able to successfully use your tool to detect sample mislabelling ; i checked the result with two methods (BAM and FASTQ ) , however, the results analyzed with bam data and FASTQ data were inconsistent. Can you guide me regarding what I should check up for successfully applying NGSCheckMate to RNAseq and WES ? Thanks