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parklab / bamsnap

MIT License
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Disabling .txt and .log output files #16

Closed cbrueffer closed 3 years ago

cbrueffer commented 3 years ago

Hi,

first of all, thanks for this very handy software!

I'm using bamsnap 2.7 and I was looking for a way to disable writing the .txt and .log output files. I tried the -save_image_only option, but if that's supposed to prevent those additional files from being written it does not seem to be working for me.

This is how I'm invoking the software:

  bamsnap \
    -bam ${input.bam} \
    -ref ${params.genome} \
    -refversion ${params.refversion} \
    -title ${name} \
    -out ${outfile}.png \
    -pos ${chr}:${start}-${end} \
    -save_image_only \
    -silence

Is it possible to accomplish this with version 2.7?

danielmsk commented 3 years ago

Hi @cbrueffer, Please use bamsnap 2.7.19.