Hello, is it possible to specify a custom annotation file instead of relying on the shipped ones? Because, the gene track plotting runs into error when using custom references, or references other than the ones for which the GTFs are shipped with this package. For example, there is no way to reliably use BAMs generated using T2T reference genome CHMv13.
Hello, is it possible to specify a custom annotation file instead of relying on the shipped ones? Because, the gene track plotting runs into error when using custom references, or references other than the ones for which the GTFs are shipped with this package. For example, there is no way to reliably use BAMs generated using T2T reference genome CHMv13.