How to extract insertion sequences in short read mode?

parklab / xTea

Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

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How to extract insertion sequences in short read mode? #122

Closed sidi-yang closed 4 months ago

sidi-yang commented 4 months ago

Hi Simon, Could you please share some methods which could be used to extract the insertion sequences in the output of xtea? How can I get the information of subfamily of these insertions?

Thank you

simoncchu commented 4 months ago

We don't have a released version for this option yet. A similar question asked here: https://github.com/parklab/xTea/issues/36. I hope it helps.