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parklab / xTea

Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
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Cannot find the target directory #83

Closed zshu-alt closed 1 year ago

zshu-alt commented 1 year ago

Hello, I have such an error in the process of running, showing RuntimeError: Cannot find the target directory: $HOME/database/xTea/xTea/xtea/genotyping/trained_model_ssc_py2_random_forest_two_category.pkl. But I'm sure the file exists and is readable and writable. My data is short read data and I hope to conduct Alu analysis. My log files and commands have been uploaded. I would be grateful if you could solve my problem. run_xTEA_pipeline.txt xTea.txt alu_WGS.txt

hzlnutspread commented 1 year ago

Hi there @simoncchu I also have the exact same problem. There is a trained_model_ssc_py2_random_forest_two_category.pkl file that is generated but it is not a directory and I get the same error when running the pipeline through conda. Would be great to have this issue solved

simoncchu commented 1 year ago

Hi, if you use the github version, do you have the same issue?