parksw3 / epidist-paper

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Add epinowcast #46

Closed seabbs closed 1 year ago

seabbs commented 1 year ago

This PR adds in the epinowcast nowcasting model as a joint approach for estimating primary incidence and delay distributions (as a forwards process). I will add in the updated figures to the draft as well as adding a model outline to the methods (as a first draft).

Something that surprised me here was the bias towards over estimating the mean at short delays. I am not at all clear where that is coming from so thoughts appreciated.