add in a way to read multiple conditions to initial read of file in order to use tempora/carry out other analyses

parmejohn / scRNA-pipeline-UofM

scRNA-seq Pipeline for Drogemoller and Wright Labs

GNU General Public License v3.0

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Closed parmejohn closed 4 months ago

parmejohn commented 4 months ago

Need to converty multiple functions to take into account for multiple co-condtions

DESeq2: Do each pairwise comparison between the main condition, and then filter by the co-conditions
Comparative GSEA: Similar to DESeq2
Trajectory: test on the different main conditions
Differential Abundance: Run on the main condition, and then the other co-conditions