Open gijsbertwerner opened 5 years ago
Trait evolution / ancestral state reconstruction functions xxx_discrete and xxx_continuous.
Underlying functions from the geiger package are relatively slow, limiting the extent to which it's feasible to use them on larger phylogenies.
For xxx_discrete, consider using the castor package instead: https://academic.oup.com/bioinformatics/article/34/6/1053/4582279. For xxx_continuous, consider using Rphylopars instead: http://doi.wiley.com/10.1002/ece3.2837 Both should be orders of magnitude smaller.
function
Trait evolution / ancestral state reconstruction functions xxx_discrete and xxx_continuous.
Problem
Underlying functions from the geiger package are relatively slow, limiting the extent to which it's feasible to use them on larger phylogenies.
Potential solutions
For xxx_discrete, consider using the castor package instead: https://academic.oup.com/bioinformatics/article/34/6/1053/4582279. For xxx_continuous, consider using Rphylopars instead: http://doi.wiley.com/10.1002/ece3.2837 Both should be orders of magnitude smaller.