search

patience111 / ARGNet

https://argnet.hku.hk
MIT License
3 stars 1 forks source link

Errors caused by codons not being multiples of three #3

Open ZYX593889540 opened 5 months ago

ZYX593889540 commented 5 months ago

Perhaps it is because the codon sequence is not a multiple of three that the program pops up. The following error occurred： 2024-05-12 11:08:56.735129: I tensorflow/core/platform/cpu_feature_guard.cc:182] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations. To enable the following instructions: SSE4.1 SSE4.2 AVX AVX2 AVX512F FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags. 0it [00:00, ?it/s]/beegfs/home/yxzhai/miniconda3/envs/ARGNet-cpu/lib/python3.11/site-packages/Bio/Seq.py:2979: BiopythonWarning: Partial codon, len(sequence) not a multiple of three. Explicitly trim the sequence or add trailing N before translation. This may become an error in future. warnings.warn( 9719221it [23:03, 7026.61it/s] /var/spool/slurmd/job20394/slurm_script: line 9: 214199 Killed

patience111 commented 2 weeks ago

From the message you provided here, the codon problem is a warning now. According to "/var/spool/slurmd/job20394/slurm_script: line 9: 214199 Killed", it seemed that your job killed by your job submission system slurm.