pato-ontology / pato

PATO - the Phenotype And Trait Ontology
https://pato-ontology.github.io/pato/
BSD 3-Clause "New" or "Revised" License
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NTR: stability/ decreased stability #113

Closed sabrinatoro closed 7 years ago

sabrinatoro commented 7 years ago

Hello, I would like to request new terms:

1)New term: stability

2) New term: decreased stability

Example: These terms could be used in an EQ statement in which E is a molecular complex (term from GO-CC), or an anatomical structure.

Thank you

cmungall commented 7 years ago

Related: https://biology.stackexchange.com/questions/56568/how-to-quantify-the-stability-of-a-protein-complex

cmungall commented 7 years ago

Following from #112 I'd be inclined to treat stability not as a type of structure but rather as a disposition of a material entity to retain a particular structure or homeostatic set of structures.

Does the parentage matter to you or do you mostly need the term IDs?

cmungall commented 7 years ago

it's tempting to treat as

add synonyms to

. PATO:0001662 ! fragility * 
 % PATO:0001362 ! fragile
  % PATO:0002056 ! decreased fragility
  % PATO:0002055 ! increased fragility
 % PATO:0001716 ! non-fragile

But I think in this case it's better to make the new class and relate it to this hierarchy via other means, fragility has many other connotations beyond not-stable

sabrinatoro commented 7 years ago

Indeed, the parentage didn't matter much to me, as I mostly needed the terms. Thank you!