pato-ontology / pato

PATO - the Phenotype And Trait Ontology
https://pato-ontology.github.io/pato/
BSD 3-Clause "New" or "Revised" License
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NTR: tower-shaped, cauliflower-shaped, fibrous, rippled, ... #338

Open raissameyer opened 4 years ago

raissameyer commented 4 years ago

Cross reference https://github.com/EnvironmentOntology/envo/pull/1002#issue-467862717

Dear PATO team, with reference to the ENVO issue above, I'll be requesting a set of qualities that I think are general enough for PATO. Please let me know if the definitional form is okay and if I should fork and make a pull request or simply add more issues.


New term: tower-shaped

Definition: An elongated quality which inheres in a bearer by virtue of the bearer extending in an upward direction such that its height exceeds that of neighbouring material entities.

Parent: http://purl.obolibrary.org/obo/PATO_0001154

Comment: As the name suggests, this quality is borne by anything resembling a constructed tower. The notions of upward and height suggest that there is some kind of convention of what "up" and "down" is. For example towards or away from the core of a planet.

dc:contributor https://orcid.org/0000-0002-2996-719X

raissameyer commented 4 years ago

New term: cauliflower-shaped

Definition: A 3-D shape quality which inheres in a bearer by virtue of the bearer having multiple compact, arborescent, budding structures with rounded tops.

Parent: 3-D shape

Comment: As the name suggests, this quality is borne by anything resembling a cauliflower.


New term: fibrous

Definition: An elongated shape quality which inheres in a bearer by virtue of the bearer resembling thin thread or filament.

Parent: elongated

Comment: As the name suggests, this quality is borne by anything resembling a fibre.


New term: rippled

Definition: A shape quality which inheres in a bearer by virtue of the bearer having regular wave-like distortions on its surface.

Parent: shape


New term: veil

Definition: A physical object quality which inheres in a bearer by virtue of the bearer having a laminar shape and being only partially translucent or transparent.

Parent: physical object quality

Comment: As the name suggests, this quality is borne by anything resembling a veil, e.g. pieces of thin material worn by humans to cover the face or head or shoulders.


New term: roll-shaped

Definition: An elongated shape quality which inheres in a bearer by virtue of the bearer being smoothly and evenly curved around its longitudinal axis.

Parent: elongated


New term: mound-shaped

Definition: A 3-D shape quality which inheres in a bearer by virtue of the bearer resembling a mound, such that the bearer projects outward from its surroundings in a rounded and smoothly curved fashion.

Parent: 3-D shape


New term: mountain-shaped

Definition: A 3-D shape quality which inheres in a bearer by virtue of the bearer resembling a mountain, in that its vertical extent varies roughly symmetrically and much more strongly than its horizontal extent.

Parent: 3-D shape