I've just run into a problem where addUMAP successfully runs but then errors when attempting to save the model. The error is reproducable on the training dataset. Wondering if someone has idea for fix?
Attach your log file
No log file is produced for addUMAP
Describe the bug
Error in addUMAP(...) function:
projHeme2 <- addUMAP(ArchRProj = projHeme2,reducedDims = "IterativeLSI",name = "UMAP", nNeighbors = 30, minDist = 0.5, metric = "cosine")
17:22:29 UMAP embedding parameters a = 0.583 b = 1.334
17:22:29 Read 10661 rows and found 30 numeric columns
17:22:29 Using Annoy for neighbor search, n_neighbors = 30
17:22:29 Building Annoy index with metric = cosine, n_trees = 50
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
17:22:31 Writing NN index file to temp file /tmp/RtmppTRa6Z/filed6387f202b1e
17:22:31 Searching Annoy index using 40 threads, search_k = 3000
17:22:31 Annoy recall = 100%
17:22:33 Commencing smooth kNN distance calibration using 40 threads
17:22:35 Initializing from normalized Laplacian + noise
17:22:36 Commencing optimization for 200 epochs, with 485984 positive edges
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
17:22:51 Optimization finished
**Error in model$nn_index$save(nn_tmpfname) : attempt to apply non-function**
To Reproduce
See above
Expected behavior
I haven't had this problem over the past months. addUMAP has successfully run up to this point.
I've just run into a problem where addUMAP successfully runs but then errors when attempting to save the model. The error is reproducable on the training dataset. Wondering if someone has idea for fix?
Attach your log file No log file is produced for addUMAP
Describe the bug Error in addUMAP(...) function:
To Reproduce See above
Expected behavior I haven't had this problem over the past months. addUMAP has successfully run up to this point.
Screenshots N/A