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patrickbryant1 / SpeedPPI

Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
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Finding residue contacts #13

Closed LucasJang7 closed 9 months ago

LucasJang7 commented 9 months ago

Hello! Thanks for putting together this great pipeline.

I just wondering if it was possible to get the exact residue contacts for each interaction. As number of residue contacts are counted, is there a way to get a list of those residue pairs directly?

Thank you!

patrickbryant1 commented 9 months ago

Hi, You would have to extract these yourself. Look at line 142 here: https://github.com/patrickbryant1/SpeedPPI/blob/master/src/run_alphafold_all_vs_all.py

Best,

Patrick