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patrickbryant1 / SpeedPPI

Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
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":" multimers #15

Closed ghost closed 5 months ago

ghost commented 6 months ago

I apologize if I missed this in your paper or in the README, but are multimers allowed in anyway? I've tried using ":" in SequenceA:SequenceB. I see that ":" is treated as an invalid character.

Just wanted to check if there's any other way before falling back to the slower AlphaFold.

patrickbryant1 commented 5 months ago

This is only for multimers. You provide the sequences in individual fasta files. Perhaps it helps to go through the test case?

ghost commented 5 months ago

Okay, so the sequences provided in fasta files must be individual sequences and can never be SequenceA:SequenceB. Thanks.