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patrickbryant1 / SpeedPPI

Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
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running time for test #24

Closed theammn closed 2 months ago

theammn commented 2 months ago

Hi, I want to use this pipeline for analysis PPI and to see how it works I installed it and made the test (some_vs_some) run, but it is running for more than 1day now, is it normal ? what is the expected running time ?

thank you for your help,

best, Thea

patrickbryant1 commented 2 months ago

Hi, No, probably you are not using GPU?

Best,

Patrick

molecules commented 2 months ago

@theammn As mentioned in the README, you can test if it's configured to use the GPU thus (assuming you're using conda and the environment is called speed_ppi):

conda activate speed_ppi
python3 ./src/test_gpu_avail.py