search

patrickbryant1 / SpeedPPI

Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
Other
65 stars 14 forks source link

all_vs_all warning #3

Closed ZilongXu closed 1 year ago

ZilongXu commented 1 year ago

Hi, the following problems occurred during using "create_ppi_all_vs_all.sh" for test file : /mnt/label/home/wanghao/software/SpeedPPI-master/src/alphafold/model/mapping.py:49: FutureWarning: jax.tree_flatten is deprecated, and will be removed in a future release. Use jax.tree_util.tree_flatten instead. values_tree_def = jax.tree_flatten(values)[1] /mnt/label/home/wanghao/software/SpeedPPI-master/src/alphafold/model/mapping.py:53: FutureWarning: jax.tree_unflatten is deprecated, and will be removed in a future release. Use jax.tree_util.tree_unflatten instead. return jax.tree_unflatten(values_tree_def, flat_axes) /mnt/label/home/wanghao/software/SpeedPPI-master/src/alphafold/model/mapping.py:124: FutureWarning: jax.tree_flatten is deprecated, and will be removed in a future release. Use jax.tree_util.tree_flatten instead. flat_sizes = jax.tree_flatten(in_sizes)[0]

patrickbryant1 commented 1 year ago

Hi, this is only a warning and should have no impact on the predictions.

ZilongXu commented 1 year ago

OK. Thank you.