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patrickbryant1 / Umol

Protein-ligand structure prediction
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'Config' object has no attribute 'define_bool_state' #23

Open aliaclarkelsayed opened 1 month ago

aliaclarkelsayed commented 1 month ago

After running the following as in the test example: conda activate umol bash predict.sh

I got the following error from configurations.py: AttributeError: 'Config' object has no attribute 'define_bool_state'

patrickbryant1 commented 1 month ago

Maybe call the commands separately? Are you sure you installed the env?

he-hai commented 1 week ago

I got the same error raised when running predict.py from the script. Not sure if it's from the compatibility problem of jax and flax https://github.com/google/flax/issues/3180

Could you @patrickbryant1 specify your final working version of jax and flax? I would like to try using the same version. I'm using Cuda 12.2 btw if relevant

But for sure, pip install --upgrade numpy in install_dependencies.sh gave me error since numpy 2 just released.

patrickbryant1 commented 1 week ago

Hi,

Maybe see some of the other errors/look in the env for the versions. FLAX is not used so idk if this is causing your issues?

I see, we will check the new versions and provide a new env in a couple of weeks.

Best,

Patrick

he-hai commented 1 week ago

Hi, good to know flax is not used. Because it is listed in the environment.yml?