I am encountering some incompatibility issues between package versions that are preventing the Colab code from running properly (see below). I suspect that the problem may be related to the version of NumPy being used. Do you have any suggestions on how to resolve this issue?
Thank you.
Looking in links: https://storage.googleapis.com/jax-releases/jax_cuda_releases.html
Requirement already satisfied: jax[cuda12_pip] in /usr/local/lib/python3.10/dist-packages (0.4.30)
Requirement already satisfied: jaxlib<=0.4.30,>=0.4.27 in /usr/local/lib/python3.10/dist-packages (from jax[cuda12_pip]) (0.4.30)
Requirement already satisfied: ml-dtypes>=0.2.0 in /usr/local/lib/python3.10/dist-packages (from jax[cuda12_pip]) (0.2.0)
Requirement already satisfied: numpy>=1.22 in /usr/local/lib/python3.10/dist-packages (from jax[cuda12_pip]) (1.22.4)
Requirement already satisfied: opt-einsum in /usr/local/lib/python3.10/dist-packages (from jax[cuda12_pip]) (3.3.0)
Collecting scipy>=1.9 (from jax[cuda12_pip])
Using cached scipy-1.14.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (41.1 MB)
Requirement already satisfied: jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30 in /usr/local/lib/python3.10/dist-packages (from jax[cuda12_pip]) (0.4.30)
Requirement already satisfied: jax-cuda12-pjrt==0.4.30 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (0.4.30)
Requirement already satisfied: nvidia-cublas-cu12>=12.1.3.1 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.3.2)
Requirement already satisfied: nvidia-cuda-cupti-cu12>=12.1.105 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.82)
Requirement already satisfied: nvidia-cuda-nvcc-cu12>=12.1.105 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.82)
Requirement already satisfied: nvidia-cuda-runtime-cu12>=12.1.105 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.82)
Requirement already satisfied: nvidia-cudnn-cu12<10.0,>=9.0 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (9.2.0.82)
Requirement already satisfied: nvidia-cufft-cu12>=11.0.2.54 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (11.2.3.61)
Requirement already satisfied: nvidia-cusolver-cu12>=11.4.5.107 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (11.6.3.83)
Requirement already satisfied: nvidia-cusparse-cu12>=12.1.0.106 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.1.3)
Requirement already satisfied: nvidia-nccl-cu12>=2.18.1 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (2.22.3)
Requirement already satisfied: nvidia-nvjitlink-cu12>=12.1.105 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.82)
Collecting numpy>=1.22 (from jax[cuda12_pip])
Using cached numpy-2.0.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.3 MB)
Installing collected packages: numpy, scipy
Attempting uninstall: numpy
Found existing installation: numpy 1.22.4
Uninstalling numpy-1.22.4:
Successfully uninstalled numpy-1.22.4
Attempting uninstall: scipy
Found existing installation: scipy 1.7.3
Uninstalling scipy-1.7.3:
Successfully uninstalled scipy-1.7.3
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
astropy 5.3.4 requires numpy<2,>=1.21, but you have numpy 2.0.0 which is incompatible.
cudf-cu12 24.4.1 requires numpy<2.0a0,>=1.23, but you have numpy 2.0.0 which is incompatible.
cudf-cu12 24.4.1 requires pandas<2.2.2dev0,>=2.0, but you have pandas 1.3.5 which is incompatible.
cudf-cu12 24.4.1 requires protobuf<5,>=3.20, but you have protobuf 3.19.6 which is incompatible.
cupy-cuda12x 12.2.0 requires numpy<1.27,>=1.20, but you have numpy 2.0.0 which is incompatible.
ibis-framework 8.0.0 requires numpy<2,>=1, but you have numpy 2.0.0 which is incompatible.
numba 0.58.1 requires numpy<1.27,>=1.22, but you have numpy 2.0.0 which is incompatible.
optax 0.2.2 requires chex>=0.1.86, but you have chex 0.1.5 which is incompatible.
pandas-gbq 0.19.2 requires google-auth-oauthlib>=0.7.0, but you have google-auth-oauthlib 0.4.6 which is incompatible.
plotnine 0.12.4 requires pandas>=1.5.0, but you have pandas 1.3.5 which is incompatible.
rmm-cu12 24.4.0 requires numpy<2.0a0,>=1.23, but you have numpy 2.0.0 which is incompatible.
statsmodels 0.14.2 requires pandas!=2.1.0,>=1.4, but you have pandas 1.3.5 which is incompatible.
tensorflow-datasets 4.9.6 requires protobuf>=3.20, but you have protobuf 3.19.6 which is incompatible.
tf-keras 2.15.1 requires tensorflow<2.16,>=2.15, but you have tensorflow 2.11.0 which is incompatible.
thinc 8.2.5 requires numpy<2.0.0,>=1.19.0; python_version >= "3.9", but you have numpy 2.0.0 which is incompatible.
xarray 2023.7.0 requires pandas>=1.4, but you have pandas 1.3.5 which is incompatible.
Successfully installed numpy-2.0.0 scipy-1.14.0
Requirement already satisfied: ml-collections==0.1.1 in /usr/local/lib/python3.10/dist-packages (0.1.1)
Requirement already satisfied: absl-py in /usr/local/lib/python3.10/dist-packages (from ml-collections==0.1.1) (1.4.0)
Requirement already satisfied: PyYAML in /usr/local/lib/python3.10/dist-packages (from ml-collections==0.1.1) (6.0.1)
Requirement already satisfied: six in /usr/local/lib/python3.10/dist-packages (from ml-collections==0.1.1) (1.16.0)
Requirement already satisfied: contextlib2 in /usr/local/lib/python3.10/dist-packages (from ml-collections==0.1.1) (21.6.0)
Requirement already satisfied: dm-haiku==0.0.11 in /usr/local/lib/python3.10/dist-packages (0.0.11)
Requirement already satisfied: absl-py>=0.7.1 in /usr/local/lib/python3.10/dist-packages (from dm-haiku==0.0.11) (1.4.0)
Requirement already satisfied: jmp>=0.0.2 in /usr/local/lib/python3.10/dist-packages (from dm-haiku==0.0.11) (0.0.4)
Requirement already satisfied: numpy>=1.18.0 in /usr/local/lib/python3.10/dist-packages (from dm-haiku==0.0.11) (2.0.0)
Requirement already satisfied: tabulate>=0.8.9 in /usr/local/lib/python3.10/dist-packages (from dm-haiku==0.0.11) (0.9.0)
Requirement already satisfied: flax>=0.7.1 in /usr/local/lib/python3.10/dist-packages (from dm-haiku==0.0.11) (0.8.4)
Requirement already satisfied: jax>=0.4.19 in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (0.4.30)
Requirement already satisfied: msgpack in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (1.0.8)
Requirement already satisfied: optax in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (0.2.2)
Requirement already satisfied: orbax-checkpoint in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (0.4.4)
Requirement already satisfied: tensorstore in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (0.1.45)
Requirement already satisfied: rich>=11.1 in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (13.7.1)
Requirement already satisfied: typing-extensions>=4.2 in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (4.12.2)
Requirement already satisfied: PyYAML>=5.4.1 in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (6.0.1)
Requirement already satisfied: jaxlib<=0.4.30,>=0.4.27 in /usr/local/lib/python3.10/dist-packages (from jax>=0.4.19->flax>=0.7.1->dm-haiku==0.0.11) (0.4.30)
Requirement already satisfied: ml-dtypes>=0.2.0 in /usr/local/lib/python3.10/dist-packages (from jax>=0.4.19->flax>=0.7.1->dm-haiku==0.0.11) (0.2.0)
Requirement already satisfied: opt-einsum in /usr/local/lib/python3.10/dist-packages (from jax>=0.4.19->flax>=0.7.1->dm-haiku==0.0.11) (3.3.0)
Requirement already satisfied: scipy>=1.9 in /usr/local/lib/python3.10/dist-packages (from jax>=0.4.19->flax>=0.7.1->dm-haiku==0.0.11) (1.14.0)
Requirement already satisfied: markdown-it-py>=2.2.0 in /usr/local/lib/python3.10/dist-packages (from rich>=11.1->flax>=0.7.1->dm-haiku==0.0.11) (3.0.0)
Requirement already satisfied: pygments<3.0.0,>=2.13.0 in /usr/local/lib/python3.10/dist-packages (from rich>=11.1->flax>=0.7.1->dm-haiku==0.0.11) (2.16.1)
Collecting chex>=0.1.86 (from optax->flax>=0.7.1->dm-haiku==0.0.11)
Using cached chex-0.1.86-py3-none-any.whl (98 kB)
Requirement already satisfied: etils[epath,epy] in /usr/local/lib/python3.10/dist-packages (from orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (1.7.0)
Requirement already satisfied: nest_asyncio in /usr/local/lib/python3.10/dist-packages (from orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (1.6.0)
Requirement already satisfied: protobuf in /usr/local/lib/python3.10/dist-packages (from orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (3.19.6)
Requirement already satisfied: toolz>=0.9.0 in /usr/local/lib/python3.10/dist-packages (from chex>=0.1.86->optax->flax>=0.7.1->dm-haiku==0.0.11) (0.12.1)
Requirement already satisfied: mdurl~=0.1 in /usr/local/lib/python3.10/dist-packages (from markdown-it-py>=2.2.0->rich>=11.1->flax>=0.7.1->dm-haiku==0.0.11) (0.1.2)
Requirement already satisfied: fsspec in /usr/local/lib/python3.10/dist-packages (from etils[epath,epy]->orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (2023.6.0)
Requirement already satisfied: importlib_resources in /usr/local/lib/python3.10/dist-packages (from etils[epath,epy]->orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (6.4.0)
Requirement already satisfied: zipp in /usr/local/lib/python3.10/dist-packages (from etils[epath,epy]->orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (3.19.2)
Installing collected packages: chex
Attempting uninstall: chex
Found existing installation: chex 0.1.5
Uninstalling chex-0.1.5:
Successfully uninstalled chex-0.1.5
Successfully installed chex-0.1.86
Requirement already satisfied: pandas==1.3.5 in /usr/local/lib/python3.10/dist-packages (1.3.5)
Requirement already satisfied: python-dateutil>=2.7.3 in /usr/local/lib/python3.10/dist-packages (from pandas==1.3.5) (2.8.2)
Requirement already satisfied: pytz>=2017.3 in /usr/local/lib/python3.10/dist-packages (from pandas==1.3.5) (2023.4)
Requirement already satisfied: numpy>=1.21.0 in /usr/local/lib/python3.10/dist-packages (from pandas==1.3.5) (2.0.0)
Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.10/dist-packages (from python-dateutil>=2.7.3->pandas==1.3.5) (1.16.0)
Requirement already satisfied: biopython==1.81 in /usr/local/lib/python3.10/dist-packages (1.81)
Requirement already satisfied: numpy in /usr/local/lib/python3.10/dist-packages (from biopython==1.81) (2.0.0)
Collecting chex==0.1.5
Using cached chex-0.1.5-py3-none-any.whl (85 kB)
Requirement already satisfied: absl-py>=0.9.0 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (1.4.0)
Requirement already satisfied: dm-tree>=0.1.5 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (0.1.8)
Requirement already satisfied: jax>=0.1.55 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (0.4.30)
Requirement already satisfied: jaxlib>=0.1.37 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (0.4.30)
Requirement already satisfied: numpy>=1.18.0 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (2.0.0)
Requirement already satisfied: toolz>=0.9.0 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (0.12.1)
Requirement already satisfied: ml-dtypes>=0.2.0 in /usr/local/lib/python3.10/dist-packages (from jax>=0.1.55->chex==0.1.5) (0.2.0)
Requirement already satisfied: opt-einsum in /usr/local/lib/python3.10/dist-packages (from jax>=0.1.55->chex==0.1.5) (3.3.0)
Requirement already satisfied: scipy>=1.9 in /usr/local/lib/python3.10/dist-packages (from jax>=0.1.55->chex==0.1.5) (1.14.0)
Installing collected packages: chex
Attempting uninstall: chex
Found existing installation: chex 0.1.86
Uninstalling chex-0.1.86:
Successfully uninstalled chex-0.1.86
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
optax 0.2.2 requires chex>=0.1.86, but you have chex 0.1.5 which is incompatible.
Successfully installed chex-0.1.5
Requirement already satisfied: dm-tree==0.1.8 in /usr/local/lib/python3.10/dist-packages (0.1.8)
Requirement already satisfied: immutabledict==2.0.0 in /usr/local/lib/python3.10/dist-packages (2.0.0)
Requirement already satisfied: numpy in /usr/local/lib/python3.10/dist-packages (2.0.0)
Collecting scipy==1.7.3
Using cached scipy-1.7.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (39.9 MB)
Collecting numpy<1.23.0,>=1.16.5 (from scipy==1.7.3)
Using cached numpy-1.22.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB)
Installing collected packages: numpy, scipy
Attempting uninstall: numpy
Found existing installation: numpy 2.0.0
Uninstalling numpy-2.0.0:
Successfully uninstalled numpy-2.0.0
Attempting uninstall: scipy
Found existing installation: scipy 1.14.0
Uninstalling scipy-1.14.0:
Successfully uninstalled scipy-1.14.0
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
arviz 0.15.1 requires scipy>=1.8.0, but you have scipy 1.7.3 which is incompatible.
cudf-cu12 24.4.1 requires numpy<2.0a0,>=1.23, but you have numpy 1.22.4 which is incompatible.
cudf-cu12 24.4.1 requires pandas<2.2.2dev0,>=2.0, but you have pandas 1.3.5 which is incompatible.
cudf-cu12 24.4.1 requires protobuf<5,>=3.20, but you have protobuf 3.19.6 which is incompatible.
jax 0.4.30 requires scipy>=1.9, but you have scipy 1.7.3 which is incompatible.
jaxlib 0.4.30 requires scipy>=1.9, but you have scipy 1.7.3 which is incompatible.
numexpr 2.10.1 requires numpy>=1.23.0, but you have numpy 1.22.4 which is incompatible.
optax 0.2.2 requires chex>=0.1.86, but you have chex 0.1.5 which is incompatible.
pandas-gbq 0.19.2 requires google-auth-oauthlib>=0.7.0, but you have google-auth-oauthlib 0.4.6 which is incompatible.
pandas-stubs 2.0.3.230814 requires numpy>=1.25.0; python_version >= "3.9", but you have numpy 1.22.4 which is incompatible.
plotnine 0.12.4 requires numpy>=1.23.0, but you have numpy 1.22.4 which is incompatible.
plotnine 0.12.4 requires pandas>=1.5.0, but you have pandas 1.3.5 which is incompatible.
rmm-cu12 24.4.0 requires numpy<2.0a0,>=1.23, but you have numpy 1.22.4 which is incompatible.
statsmodels 0.14.2 requires pandas!=2.1.0,>=1.4, but you have pandas 1.3.5 which is incompatible.
statsmodels 0.14.2 requires scipy!=1.9.2,>=1.8, but you have scipy 1.7.3 which is incompatible.
tensorflow-datasets 4.9.6 requires protobuf>=3.20, but you have protobuf 3.19.6 which is incompatible.
tf-keras 2.15.1 requires tensorflow<2.16,>=2.15, but you have tensorflow 2.11.0 which is incompatible.
xarray 2023.7.0 requires pandas>=1.4, but you have pandas 1.3.5 which is incompatible.
xarray-einstats 0.7.0 requires scipy>=1.8, but you have scipy 1.7.3 which is incompatible.
Successfully installed numpy-1.22.4 scipy-1.7.3
WARNING: The following packages were previously imported in this runtime:
[numpy]
You must restart the runtime in order to use newly installed versions.
Requirement already satisfied: tensorflow==2.11.0 in /usr/local/lib/python3.10/dist-packages (2.11.0)
Requirement already satisfied: absl-py>=1.0.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.4.0)
Requirement already satisfied: astunparse>=1.6.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.6.3)
Requirement already satisfied: flatbuffers>=2.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (24.3.25)
Requirement already satisfied: gast<=0.4.0,>=0.2.1 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (0.4.0)
Requirement already satisfied: google-pasta>=0.1.1 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (0.2.0)
Requirement already satisfied: grpcio<2.0,>=1.24.3 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.64.1)
Requirement already satisfied: h5py>=2.9.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (3.9.0)
Requirement already satisfied: keras<2.12,>=2.11.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (2.11.0)
Requirement already satisfied: libclang>=13.0.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (18.1.1)
Requirement already satisfied: numpy>=1.20 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.22.4)
Requirement already satisfied: opt-einsum>=2.3.2 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (3.3.0)
Requirement already satisfied: packaging in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (24.1)
Requirement already satisfied: protobuf<3.20,>=3.9.2 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (3.19.6)
Requirement already satisfied: setuptools in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (67.7.2)
Requirement already satisfied: six>=1.12.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.16.0)
Requirement already satisfied: tensorboard<2.12,>=2.11 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (2.11.2)
Requirement already satisfied: tensorflow-estimator<2.12,>=2.11.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (2.11.0)
Requirement already satisfied: termcolor>=1.1.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (2.4.0)
Requirement already satisfied: typing-extensions>=3.6.6 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (4.12.2)
Requirement already satisfied: wrapt>=1.11.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.14.1)
Requirement already satisfied: tensorflow-io-gcs-filesystem>=0.23.1 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (0.37.0)
Requirement already satisfied: wheel<1.0,>=0.23.0 in /usr/local/lib/python3.10/dist-packages (from astunparse>=1.6.0->tensorflow==2.11.0) (0.43.0)
Requirement already satisfied: google-auth<3,>=1.6.3 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (2.27.0)
Requirement already satisfied: google-auth-oauthlib<0.5,>=0.4.1 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (0.4.6)
Requirement already satisfied: markdown>=2.6.8 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (3.6)
Requirement already satisfied: requests<3,>=2.21.0 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (2.31.0)
Requirement already satisfied: tensorboard-data-server<0.7.0,>=0.6.0 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (0.6.1)
Requirement already satisfied: tensorboard-plugin-wit>=1.6.0 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (1.8.1)
Requirement already satisfied: werkzeug>=1.0.1 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (3.0.3)
Requirement already satisfied: cachetools<6.0,>=2.0.0 in /usr/local/lib/python3.10/dist-packages (from google-auth<3,>=1.6.3->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (5.3.3)
Requirement already satisfied: pyasn1-modules>=0.2.1 in /usr/local/lib/python3.10/dist-packages (from google-auth<3,>=1.6.3->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (0.4.0)
Requirement already satisfied: rsa<5,>=3.1.4 in /usr/local/lib/python3.10/dist-packages (from google-auth<3,>=1.6.3->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (4.9)
Requirement already satisfied: requests-oauthlib>=0.7.0 in /usr/local/lib/python3.10/dist-packages (from google-auth-oauthlib<0.5,>=0.4.1->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (1.3.1)
Requirement already satisfied: charset-normalizer<4,>=2 in /usr/local/lib/python3.10/dist-packages (from requests<3,>=2.21.0->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in /usr/local/lib/python3.10/dist-packages (from requests<3,>=2.21.0->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (3.7)
Requirement already satisfied: urllib3<3,>=1.21.1 in /usr/local/lib/python3.10/dist-packages (from requests<3,>=2.21.0->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (2.0.7)
Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.10/dist-packages (from requests<3,>=2.21.0->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (2024.6.2)
Requirement already satisfied: MarkupSafe>=2.1.1 in /usr/local/lib/python3.10/dist-packages (from werkzeug>=1.0.1->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (2.1.5)
Requirement already satisfied: pyasn1<0.7.0,>=0.4.6 in /usr/local/lib/python3.10/dist-packages (from pyasn1-modules>=0.2.1->google-auth<3,>=1.6.3->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (0.6.0)
Requirement already satisfied: oauthlib>=3.0.0 in /usr/local/lib/python3.10/dist-packages (from requests-oauthlib>=0.7.0->google-auth-oauthlib<0.5,>=0.4.1->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (3.2.2)
Requirement already satisfied: rdkit-pypi in /usr/local/lib/python3.10/dist-packages (2022.9.5)
Requirement already satisfied: numpy in /usr/local/lib/python3.10/dist-packages (from rdkit-pypi) (1.22.4)
Requirement already satisfied: Pillow in /usr/local/lib/python3.10/dist-packages (from rdkit-pypi) (9.4.0)
Requirement already satisfied: py3Dmol in /usr/local/lib/python3.10/dist-packages (2.1.0)
Hello,
I am encountering some incompatibility issues between package versions that are preventing the Colab code from running properly (see below). I suspect that the problem may be related to the version of NumPy being used. Do you have any suggestions on how to resolve this issue?
Thank you.
Looking in links: https://storage.googleapis.com/jax-releases/jax_cuda_releases.html Requirement already satisfied: jax[cuda12_pip] in /usr/local/lib/python3.10/dist-packages (0.4.30) Requirement already satisfied: jaxlib<=0.4.30,>=0.4.27 in /usr/local/lib/python3.10/dist-packages (from jax[cuda12_pip]) (0.4.30) Requirement already satisfied: ml-dtypes>=0.2.0 in /usr/local/lib/python3.10/dist-packages (from jax[cuda12_pip]) (0.2.0) Requirement already satisfied: numpy>=1.22 in /usr/local/lib/python3.10/dist-packages (from jax[cuda12_pip]) (1.22.4) Requirement already satisfied: opt-einsum in /usr/local/lib/python3.10/dist-packages (from jax[cuda12_pip]) (3.3.0) Collecting scipy>=1.9 (from jax[cuda12_pip]) Using cached scipy-1.14.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (41.1 MB) Requirement already satisfied: jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30 in /usr/local/lib/python3.10/dist-packages (from jax[cuda12_pip]) (0.4.30) Requirement already satisfied: jax-cuda12-pjrt==0.4.30 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (0.4.30) Requirement already satisfied: nvidia-cublas-cu12>=12.1.3.1 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.3.2) Requirement already satisfied: nvidia-cuda-cupti-cu12>=12.1.105 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.82) Requirement already satisfied: nvidia-cuda-nvcc-cu12>=12.1.105 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.82) Requirement already satisfied: nvidia-cuda-runtime-cu12>=12.1.105 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.82) Requirement already satisfied: nvidia-cudnn-cu12<10.0,>=9.0 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (9.2.0.82) Requirement already satisfied: nvidia-cufft-cu12>=11.0.2.54 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (11.2.3.61) Requirement already satisfied: nvidia-cusolver-cu12>=11.4.5.107 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (11.6.3.83) Requirement already satisfied: nvidia-cusparse-cu12>=12.1.0.106 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.1.3) Requirement already satisfied: nvidia-nccl-cu12>=2.18.1 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (2.22.3) Requirement already satisfied: nvidia-nvjitlink-cu12>=12.1.105 in /usr/local/lib/python3.10/dist-packages (from jax-cuda12-plugin[with_cuda]<=0.4.30,>=0.4.30->jax[cuda12_pip]) (12.5.82) Collecting numpy>=1.22 (from jax[cuda12_pip]) Using cached numpy-2.0.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.3 MB) Installing collected packages: numpy, scipy Attempting uninstall: numpy Found existing installation: numpy 1.22.4 Uninstalling numpy-1.22.4: Successfully uninstalled numpy-1.22.4 Attempting uninstall: scipy Found existing installation: scipy 1.7.3 Uninstalling scipy-1.7.3: Successfully uninstalled scipy-1.7.3 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. astropy 5.3.4 requires numpy<2,>=1.21, but you have numpy 2.0.0 which is incompatible. cudf-cu12 24.4.1 requires numpy<2.0a0,>=1.23, but you have numpy 2.0.0 which is incompatible. cudf-cu12 24.4.1 requires pandas<2.2.2dev0,>=2.0, but you have pandas 1.3.5 which is incompatible. cudf-cu12 24.4.1 requires protobuf<5,>=3.20, but you have protobuf 3.19.6 which is incompatible. cupy-cuda12x 12.2.0 requires numpy<1.27,>=1.20, but you have numpy 2.0.0 which is incompatible. ibis-framework 8.0.0 requires numpy<2,>=1, but you have numpy 2.0.0 which is incompatible. numba 0.58.1 requires numpy<1.27,>=1.22, but you have numpy 2.0.0 which is incompatible. optax 0.2.2 requires chex>=0.1.86, but you have chex 0.1.5 which is incompatible. pandas-gbq 0.19.2 requires google-auth-oauthlib>=0.7.0, but you have google-auth-oauthlib 0.4.6 which is incompatible. plotnine 0.12.4 requires pandas>=1.5.0, but you have pandas 1.3.5 which is incompatible. rmm-cu12 24.4.0 requires numpy<2.0a0,>=1.23, but you have numpy 2.0.0 which is incompatible. statsmodels 0.14.2 requires pandas!=2.1.0,>=1.4, but you have pandas 1.3.5 which is incompatible. tensorflow-datasets 4.9.6 requires protobuf>=3.20, but you have protobuf 3.19.6 which is incompatible. tf-keras 2.15.1 requires tensorflow<2.16,>=2.15, but you have tensorflow 2.11.0 which is incompatible. thinc 8.2.5 requires numpy<2.0.0,>=1.19.0; python_version >= "3.9", but you have numpy 2.0.0 which is incompatible. xarray 2023.7.0 requires pandas>=1.4, but you have pandas 1.3.5 which is incompatible. Successfully installed numpy-2.0.0 scipy-1.14.0 Requirement already satisfied: ml-collections==0.1.1 in /usr/local/lib/python3.10/dist-packages (0.1.1) Requirement already satisfied: absl-py in /usr/local/lib/python3.10/dist-packages (from ml-collections==0.1.1) (1.4.0) Requirement already satisfied: PyYAML in /usr/local/lib/python3.10/dist-packages (from ml-collections==0.1.1) (6.0.1) Requirement already satisfied: six in /usr/local/lib/python3.10/dist-packages (from ml-collections==0.1.1) (1.16.0) Requirement already satisfied: contextlib2 in /usr/local/lib/python3.10/dist-packages (from ml-collections==0.1.1) (21.6.0) Requirement already satisfied: dm-haiku==0.0.11 in /usr/local/lib/python3.10/dist-packages (0.0.11) Requirement already satisfied: absl-py>=0.7.1 in /usr/local/lib/python3.10/dist-packages (from dm-haiku==0.0.11) (1.4.0) Requirement already satisfied: jmp>=0.0.2 in /usr/local/lib/python3.10/dist-packages (from dm-haiku==0.0.11) (0.0.4) Requirement already satisfied: numpy>=1.18.0 in /usr/local/lib/python3.10/dist-packages (from dm-haiku==0.0.11) (2.0.0) Requirement already satisfied: tabulate>=0.8.9 in /usr/local/lib/python3.10/dist-packages (from dm-haiku==0.0.11) (0.9.0) Requirement already satisfied: flax>=0.7.1 in /usr/local/lib/python3.10/dist-packages (from dm-haiku==0.0.11) (0.8.4) Requirement already satisfied: jax>=0.4.19 in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (0.4.30) Requirement already satisfied: msgpack in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (1.0.8) Requirement already satisfied: optax in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (0.2.2) Requirement already satisfied: orbax-checkpoint in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (0.4.4) Requirement already satisfied: tensorstore in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (0.1.45) Requirement already satisfied: rich>=11.1 in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (13.7.1) Requirement already satisfied: typing-extensions>=4.2 in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (4.12.2) Requirement already satisfied: PyYAML>=5.4.1 in /usr/local/lib/python3.10/dist-packages (from flax>=0.7.1->dm-haiku==0.0.11) (6.0.1) Requirement already satisfied: jaxlib<=0.4.30,>=0.4.27 in /usr/local/lib/python3.10/dist-packages (from jax>=0.4.19->flax>=0.7.1->dm-haiku==0.0.11) (0.4.30) Requirement already satisfied: ml-dtypes>=0.2.0 in /usr/local/lib/python3.10/dist-packages (from jax>=0.4.19->flax>=0.7.1->dm-haiku==0.0.11) (0.2.0) Requirement already satisfied: opt-einsum in /usr/local/lib/python3.10/dist-packages (from jax>=0.4.19->flax>=0.7.1->dm-haiku==0.0.11) (3.3.0) Requirement already satisfied: scipy>=1.9 in /usr/local/lib/python3.10/dist-packages (from jax>=0.4.19->flax>=0.7.1->dm-haiku==0.0.11) (1.14.0) Requirement already satisfied: markdown-it-py>=2.2.0 in /usr/local/lib/python3.10/dist-packages (from rich>=11.1->flax>=0.7.1->dm-haiku==0.0.11) (3.0.0) Requirement already satisfied: pygments<3.0.0,>=2.13.0 in /usr/local/lib/python3.10/dist-packages (from rich>=11.1->flax>=0.7.1->dm-haiku==0.0.11) (2.16.1) Collecting chex>=0.1.86 (from optax->flax>=0.7.1->dm-haiku==0.0.11) Using cached chex-0.1.86-py3-none-any.whl (98 kB) Requirement already satisfied: etils[epath,epy] in /usr/local/lib/python3.10/dist-packages (from orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (1.7.0) Requirement already satisfied: nest_asyncio in /usr/local/lib/python3.10/dist-packages (from orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (1.6.0) Requirement already satisfied: protobuf in /usr/local/lib/python3.10/dist-packages (from orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (3.19.6) Requirement already satisfied: toolz>=0.9.0 in /usr/local/lib/python3.10/dist-packages (from chex>=0.1.86->optax->flax>=0.7.1->dm-haiku==0.0.11) (0.12.1) Requirement already satisfied: mdurl~=0.1 in /usr/local/lib/python3.10/dist-packages (from markdown-it-py>=2.2.0->rich>=11.1->flax>=0.7.1->dm-haiku==0.0.11) (0.1.2) Requirement already satisfied: fsspec in /usr/local/lib/python3.10/dist-packages (from etils[epath,epy]->orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (2023.6.0) Requirement already satisfied: importlib_resources in /usr/local/lib/python3.10/dist-packages (from etils[epath,epy]->orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (6.4.0) Requirement already satisfied: zipp in /usr/local/lib/python3.10/dist-packages (from etils[epath,epy]->orbax-checkpoint->flax>=0.7.1->dm-haiku==0.0.11) (3.19.2) Installing collected packages: chex Attempting uninstall: chex Found existing installation: chex 0.1.5 Uninstalling chex-0.1.5: Successfully uninstalled chex-0.1.5 Successfully installed chex-0.1.86 Requirement already satisfied: pandas==1.3.5 in /usr/local/lib/python3.10/dist-packages (1.3.5) Requirement already satisfied: python-dateutil>=2.7.3 in /usr/local/lib/python3.10/dist-packages (from pandas==1.3.5) (2.8.2) Requirement already satisfied: pytz>=2017.3 in /usr/local/lib/python3.10/dist-packages (from pandas==1.3.5) (2023.4) Requirement already satisfied: numpy>=1.21.0 in /usr/local/lib/python3.10/dist-packages (from pandas==1.3.5) (2.0.0) Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.10/dist-packages (from python-dateutil>=2.7.3->pandas==1.3.5) (1.16.0) Requirement already satisfied: biopython==1.81 in /usr/local/lib/python3.10/dist-packages (1.81) Requirement already satisfied: numpy in /usr/local/lib/python3.10/dist-packages (from biopython==1.81) (2.0.0) Collecting chex==0.1.5 Using cached chex-0.1.5-py3-none-any.whl (85 kB) Requirement already satisfied: absl-py>=0.9.0 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (1.4.0) Requirement already satisfied: dm-tree>=0.1.5 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (0.1.8) Requirement already satisfied: jax>=0.1.55 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (0.4.30) Requirement already satisfied: jaxlib>=0.1.37 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (0.4.30) Requirement already satisfied: numpy>=1.18.0 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (2.0.0) Requirement already satisfied: toolz>=0.9.0 in /usr/local/lib/python3.10/dist-packages (from chex==0.1.5) (0.12.1) Requirement already satisfied: ml-dtypes>=0.2.0 in /usr/local/lib/python3.10/dist-packages (from jax>=0.1.55->chex==0.1.5) (0.2.0) Requirement already satisfied: opt-einsum in /usr/local/lib/python3.10/dist-packages (from jax>=0.1.55->chex==0.1.5) (3.3.0) Requirement already satisfied: scipy>=1.9 in /usr/local/lib/python3.10/dist-packages (from jax>=0.1.55->chex==0.1.5) (1.14.0) Installing collected packages: chex Attempting uninstall: chex Found existing installation: chex 0.1.86 Uninstalling chex-0.1.86: Successfully uninstalled chex-0.1.86 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. optax 0.2.2 requires chex>=0.1.86, but you have chex 0.1.5 which is incompatible. Successfully installed chex-0.1.5 Requirement already satisfied: dm-tree==0.1.8 in /usr/local/lib/python3.10/dist-packages (0.1.8) Requirement already satisfied: immutabledict==2.0.0 in /usr/local/lib/python3.10/dist-packages (2.0.0) Requirement already satisfied: numpy in /usr/local/lib/python3.10/dist-packages (2.0.0) Collecting scipy==1.7.3 Using cached scipy-1.7.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (39.9 MB) Collecting numpy<1.23.0,>=1.16.5 (from scipy==1.7.3) Using cached numpy-1.22.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB) Installing collected packages: numpy, scipy Attempting uninstall: numpy Found existing installation: numpy 2.0.0 Uninstalling numpy-2.0.0: Successfully uninstalled numpy-2.0.0 Attempting uninstall: scipy Found existing installation: scipy 1.14.0 Uninstalling scipy-1.14.0: Successfully uninstalled scipy-1.14.0 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. arviz 0.15.1 requires scipy>=1.8.0, but you have scipy 1.7.3 which is incompatible. cudf-cu12 24.4.1 requires numpy<2.0a0,>=1.23, but you have numpy 1.22.4 which is incompatible. cudf-cu12 24.4.1 requires pandas<2.2.2dev0,>=2.0, but you have pandas 1.3.5 which is incompatible. cudf-cu12 24.4.1 requires protobuf<5,>=3.20, but you have protobuf 3.19.6 which is incompatible. jax 0.4.30 requires scipy>=1.9, but you have scipy 1.7.3 which is incompatible. jaxlib 0.4.30 requires scipy>=1.9, but you have scipy 1.7.3 which is incompatible. numexpr 2.10.1 requires numpy>=1.23.0, but you have numpy 1.22.4 which is incompatible. optax 0.2.2 requires chex>=0.1.86, but you have chex 0.1.5 which is incompatible. pandas-gbq 0.19.2 requires google-auth-oauthlib>=0.7.0, but you have google-auth-oauthlib 0.4.6 which is incompatible. pandas-stubs 2.0.3.230814 requires numpy>=1.25.0; python_version >= "3.9", but you have numpy 1.22.4 which is incompatible. plotnine 0.12.4 requires numpy>=1.23.0, but you have numpy 1.22.4 which is incompatible. plotnine 0.12.4 requires pandas>=1.5.0, but you have pandas 1.3.5 which is incompatible. rmm-cu12 24.4.0 requires numpy<2.0a0,>=1.23, but you have numpy 1.22.4 which is incompatible. statsmodels 0.14.2 requires pandas!=2.1.0,>=1.4, but you have pandas 1.3.5 which is incompatible. statsmodels 0.14.2 requires scipy!=1.9.2,>=1.8, but you have scipy 1.7.3 which is incompatible. tensorflow-datasets 4.9.6 requires protobuf>=3.20, but you have protobuf 3.19.6 which is incompatible. tf-keras 2.15.1 requires tensorflow<2.16,>=2.15, but you have tensorflow 2.11.0 which is incompatible. xarray 2023.7.0 requires pandas>=1.4, but you have pandas 1.3.5 which is incompatible. xarray-einstats 0.7.0 requires scipy>=1.8, but you have scipy 1.7.3 which is incompatible. Successfully installed numpy-1.22.4 scipy-1.7.3 WARNING: The following packages were previously imported in this runtime: [numpy] You must restart the runtime in order to use newly installed versions. Requirement already satisfied: tensorflow==2.11.0 in /usr/local/lib/python3.10/dist-packages (2.11.0) Requirement already satisfied: absl-py>=1.0.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.4.0) Requirement already satisfied: astunparse>=1.6.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.6.3) Requirement already satisfied: flatbuffers>=2.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (24.3.25) Requirement already satisfied: gast<=0.4.0,>=0.2.1 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (0.4.0) Requirement already satisfied: google-pasta>=0.1.1 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (0.2.0) Requirement already satisfied: grpcio<2.0,>=1.24.3 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.64.1) Requirement already satisfied: h5py>=2.9.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (3.9.0) Requirement already satisfied: keras<2.12,>=2.11.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (2.11.0) Requirement already satisfied: libclang>=13.0.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (18.1.1) Requirement already satisfied: numpy>=1.20 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.22.4) Requirement already satisfied: opt-einsum>=2.3.2 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (3.3.0) Requirement already satisfied: packaging in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (24.1) Requirement already satisfied: protobuf<3.20,>=3.9.2 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (3.19.6) Requirement already satisfied: setuptools in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (67.7.2) Requirement already satisfied: six>=1.12.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.16.0) Requirement already satisfied: tensorboard<2.12,>=2.11 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (2.11.2) Requirement already satisfied: tensorflow-estimator<2.12,>=2.11.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (2.11.0) Requirement already satisfied: termcolor>=1.1.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (2.4.0) Requirement already satisfied: typing-extensions>=3.6.6 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (4.12.2) Requirement already satisfied: wrapt>=1.11.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (1.14.1) Requirement already satisfied: tensorflow-io-gcs-filesystem>=0.23.1 in /usr/local/lib/python3.10/dist-packages (from tensorflow==2.11.0) (0.37.0) Requirement already satisfied: wheel<1.0,>=0.23.0 in /usr/local/lib/python3.10/dist-packages (from astunparse>=1.6.0->tensorflow==2.11.0) (0.43.0) Requirement already satisfied: google-auth<3,>=1.6.3 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (2.27.0) Requirement already satisfied: google-auth-oauthlib<0.5,>=0.4.1 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (0.4.6) Requirement already satisfied: markdown>=2.6.8 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (3.6) Requirement already satisfied: requests<3,>=2.21.0 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (2.31.0) Requirement already satisfied: tensorboard-data-server<0.7.0,>=0.6.0 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (0.6.1) Requirement already satisfied: tensorboard-plugin-wit>=1.6.0 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (1.8.1) Requirement already satisfied: werkzeug>=1.0.1 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.12,>=2.11->tensorflow==2.11.0) (3.0.3) Requirement already satisfied: cachetools<6.0,>=2.0.0 in /usr/local/lib/python3.10/dist-packages (from google-auth<3,>=1.6.3->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (5.3.3) Requirement already satisfied: pyasn1-modules>=0.2.1 in /usr/local/lib/python3.10/dist-packages (from google-auth<3,>=1.6.3->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (0.4.0) Requirement already satisfied: rsa<5,>=3.1.4 in /usr/local/lib/python3.10/dist-packages (from google-auth<3,>=1.6.3->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (4.9) Requirement already satisfied: requests-oauthlib>=0.7.0 in /usr/local/lib/python3.10/dist-packages (from google-auth-oauthlib<0.5,>=0.4.1->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (1.3.1) Requirement already satisfied: charset-normalizer<4,>=2 in /usr/local/lib/python3.10/dist-packages (from requests<3,>=2.21.0->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (3.3.2) Requirement already satisfied: idna<4,>=2.5 in 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requests-oauthlib>=0.7.0->google-auth-oauthlib<0.5,>=0.4.1->tensorboard<2.12,>=2.11->tensorflow==2.11.0) (3.2.2) Requirement already satisfied: rdkit-pypi in /usr/local/lib/python3.10/dist-packages (2022.9.5) Requirement already satisfied: numpy in /usr/local/lib/python3.10/dist-packages (from rdkit-pypi) (1.22.4) Requirement already satisfied: Pillow in /usr/local/lib/python3.10/dist-packages (from rdkit-pypi) (9.4.0) Requirement already satisfied: py3Dmol in /usr/local/lib/python3.10/dist-packages (2.1.0)